Alignment Stats
Sequence pairs analysed in total |
76522716 |
Paired-end alignments with a unique best hit |
47127724 |
Pairs without alignments under any condition |
17253197 |
Pairs that did not map uniquely |
12141795 |
Genomic sequence context not extractable (edges of chromosomes) |
96 |
|
|
Cytosine Methylation
Total C's analysed |
1636781777 |
Methylated C's in CpG context |
22358259 |
Methylated C's in CHG context |
1394261 |
Methylated C's in CHH context |
5914275 |
Methylated C's in Unknown context |
52616 |
Unmethylated C's in CpG context |
191433820 |
Unmethylated C's in CHG context |
285827469 |
Unmethylated C's in CHH context |
1129853693 |
Unmethylated C's in Unknown context |
3992972 |
Percentage methylation (CpG context) |
10.5% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
11765055 |
original top strand |
CTOT |
11788130 |
complementary to original top strand |
CTOB |
11797392 |
complementary to original bottom strand |
OB |
11777051 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
47127628 |
Unique alignments |
38388821 |
Duplicates removed |
8738807 |
Duplicated alignments were found at 7320561 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
923441134 |
Methylated C's in CpG context |
12160729 |
Methylated C's in CHG context |
771829 |
Methylated C's in CHH context |
3314006 |
Unmethylated C's in CpG context |
106774410 |
Unmethylated C's in CHG context |
159361439 |
Unmethylated C's in CHH context |
641058721 |
Percentage methylation (CpG context) |
10.2% |
Percentage methylation (CHG context) |
0.5% |
Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot