Alignment Stats
Sequence pairs analysed in total |
77576026 |
Paired-end alignments with a unique best hit |
48007674 |
Pairs without alignments under any condition |
16783783 |
Pairs that did not map uniquely |
12784569 |
Genomic sequence context not extractable (edges of chromosomes) |
123 |
|
|
Cytosine Methylation
Total C's analysed |
1687130988 |
Methylated C's in CpG context |
22194995 |
Methylated C's in CHG context |
1322680 |
Methylated C's in CHH context |
5572782 |
Methylated C's in Unknown context |
51737 |
Unmethylated C's in CpG context |
200864245 |
Unmethylated C's in CHG context |
297108560 |
Unmethylated C's in CHH context |
1160067726 |
Unmethylated C's in Unknown context |
4034330 |
Percentage methylation (CpG context) |
10.0% |
Percentage methylation (CHG context) |
0.4% |
Percentage methylation (CHH context) |
0.5% |
Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
OT |
11986262 |
original top strand |
CTOT |
11977878 |
complementary to original top strand |
CTOB |
12029411 |
complementary to original bottom strand |
OB |
12014000 |
original bottom strand |
|
|
Deduplication
Alignments analysed |
48007551 |
Unique alignments |
39146855 |
Duplicates removed |
8860696 |
Duplicated alignments were found at 7366422 different positions |
|
|
Cytosine Methylation after Extraction
Total C's analysed |
942295272 |
Methylated C's in CpG context |
12005773 |
Methylated C's in CHG context |
727974 |
Methylated C's in CHH context |
3110667 |
Unmethylated C's in CpG context |
110469959 |
Unmethylated C's in CHG context |
163950124 |
Unmethylated C's in CHH context |
652030775 |
Percentage methylation (CpG context) |
9.8% |
Percentage methylation (CHG context) |
0.4% |
Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot