Alignment Stats
| Sequence pairs analysed in total |
77576026 |
| Paired-end alignments with a unique best hit |
48007674 |
| Pairs without alignments under any condition |
16783783 |
| Pairs that did not map uniquely |
12784569 |
| Genomic sequence context not extractable (edges of chromosomes) |
123 |
|
|
Cytosine Methylation
| Total C's analysed |
1687130988 |
| Methylated C's in CpG context |
22194995 |
| Methylated C's in CHG context |
1322680 |
| Methylated C's in CHH context |
5572782 |
| Methylated C's in Unknown context |
51737 |
| Unmethylated C's in CpG context |
200864245 |
| Unmethylated C's in CHG context |
297108560 |
| Unmethylated C's in CHH context |
1160067726 |
| Unmethylated C's in Unknown context |
4034330 |
| Percentage methylation (CpG context) |
10.0% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
11986262 |
original top strand |
| CTOT |
11977878 |
complementary to original top strand |
| CTOB |
12029411 |
complementary to original bottom strand |
| OB |
12014000 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
48007551 |
| Unique alignments |
39146855 |
| Duplicates removed |
8860696 |
| Duplicated alignments were found at 7366422 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
942295272 |
| Methylated C's in CpG context |
12005773 |
| Methylated C's in CHG context |
727974 |
| Methylated C's in CHH context |
3110667 |
| Unmethylated C's in CpG context |
110469959 |
| Unmethylated C's in CHG context |
163950124 |
| Unmethylated C's in CHH context |
652030775 |
| Percentage methylation (CpG context) |
9.8% |
| Percentage methylation (CHG context) |
0.4% |
| Percentage methylation (CHH context) |
0.5% |
|
|
M-Bias Plot
|
|
