Sample	cutadapt_version	r_processed	r_with_adapters	r_written	bp_processed	quality_trimmed	bp_written	percent_trimmed
CF01-CM01-Zygote_1	4.9	32085370	11746543	32085370	3688547947	2030351	3655040603	0.9084155738643025
CF01-CM01-Zygote_2	4.9	32085370	11084733	32085370	3692716027	3379769	3664755237	0.7571876579612223
CF01-CM02-Larvae_1	4.9	134159156	54008328	134159156	14290757001	10212960	14173841046	0.8181228957417636
CF01-CM02-Larvae_2	4.9	134159156	49227855	134159156	14313410723	14687926	14211929529	0.7089937958458177
CF02-CM02-Zygote_1	4.9	207947580	85022334	207947580	22304797933	14481723	22045267601	1.163562802853391
CF02-CM02-Zygote_2	4.9	207947580	80655849	207947580	22352487043	24105450	22117732236	1.050240210623528
CF03-CM03-Zygote_1	4.9	131905267	54145034	131905267	13593579795	9561827	13383570297	1.5449168001886142
CF03-CM03-Zygote_2	4.9	131905267	52450827	131905267	13533971611	13289241	13411407067	0.9056066284370161
CF03-CM04-Larvae_1	4.9	122610860	42597687	122610860	13495632112	11594868	13416564638	0.5858745506977405
CF03-CM04-Larvae_2	4.9	122610860	41471285	122610860	13606195831	22737723	13520812997	0.6275290688192653
CF03-CM05-Larvae_1	4.9	114639363	49271031	114639363	13123738024	10426239	12891707129	1.7680244346212501
CF03-CM05-Larvae_2	4.9	114639363	45246470	114639363	13143942583	14355762	12986034790	1.2013731192361827
CF04-CM04-Zygote_1	4.9	129476805	50259089	129476805	14121171799	9705024	14021813288	0.7036137822998241
CF04-CM04-Zygote_2	4.9	129476805	51400737	129476805	14146812320	15537711	14047413961	0.7026201857465513
CF05-CM02-Larvae_1	4.9	164974181	66760644	164974181	18441618704	13400361	18262554200	0.9709804051048989
CF05-CM02-Larvae_2	4.9	164974181	61436310	164974181	18479514280	22224076	18326539419	0.8278078020998721
CF05-CM05-Zygote_1	4.9	146024492	58144391	146024492	15676714124	10985153	15519394104	1.003526751560479
CF05-CM05-Zygote_2	4.9	146024492	57490376	146024492	15700107810	14893864	15556906326	0.9121050997419871
CF06-CM01-Zygote_1	4.9	148365024	65760120	148365024	15347486573	10325123	15038753668	2.0116186681872525
CF06-CM01-Zygote_2	4.9	148365024	61382255	148365024	15372629808	12708618	15143212951	1.492372221704124
CF06-CM02-Larvae_1	4.9	113129286	52101506	113129286	12677039769	8104230	12355100855	2.539543299274476
CF06-CM02-Larvae_2	4.9	113129286	46801611	113129286	12709761460	13531827	12503942891	1.6193739721060036
CF07-CM02-Zygote_1	4.9	213416759	79031783	213416759	23292192396	13317813	23120508455	0.7370879395169495
CF07-CM02-Zygote_2	4.9	213416759	76515096	213416759	23401849733	28887736	23233480869	0.7194681870064976
CF08-CM03-Zygote_1	4.9	147000143	60866971	147000143	15593935824	10302218	15420958739	1.1092586692179272
CF08-CM03-Zygote_2	4.9	147000143	59348990	147000143	15638672299	16885794	15479115062	1.0202735497578188
CF08-CM04-Larvae_1	4.9	53999416	18475820	53999416	6579471936	2771288	6550358571	0.4424878665520916
CF08-CM04-Larvae_2	4.9	53999416	18530079	53999416	6618122639	7664270	6585437118	0.49387904671616645
CF08-CM05-Larvae_1	4.9	80683717	30343817	80683717	10526921681	4890446	10482334143	0.4235572311749585
CF08-CM05-Larvae_2	4.9	80683717	27717199	80683717	10643633574	14717751	10594672186	0.4600063282862503
EF01-EM01-Zygote_1	4.9	123554588	57172718	123554588	13498684803	8057522	13118284892	2.8180516587472173
EF01-EM01-Zygote_2	4.9	123554588	51326537	123554588	13534871075	13790444	13294724542	1.7742801661670058
EF02-EM02-Zygote_1	4.9	144270632	56134124	144270632	14393013443	11271610	14266634713	0.878056082560417
EF02-EM02-Zygote_2	4.9	144270632	57874439	144270632	14426849800	16028874	14307613662	0.8264876924136272
EF03-EM03-Zygote_1	4.9	135271836	59075009	135271836	14189890297	8739649	13905756786	2.002365804477509
EF03-EM03-Zygote_2	4.9	135271836	56113043	135271836	14228242406	14232158	13992662919	1.6557174124377934
EF03-EM04-Larvae_1	4.9	133115292	52763971	133115292	14738378156	11051654	14595942193	0.9664290160855608
EF03-EM04-Larvae_2	4.9	133115292	52015136	133115292	14755139631	14530223	14631838719	0.8356472055401588
EF03-EM05-Larvae_1	4.9	137327090	61162067	137327090	15608503366	10906576	15273468655	2.1464883797238756
EF03-EM05-Larvae_2	4.9	137327090	55300888	137327090	15635076628	17910221	15418440092	1.3855802638794716
EF04-EM04-Zygote_1	4.9	157236689	82099658	157236689	15810976248	10213821	14903528977	5.7393500361167575
EF04-EM04-Zygote_2	4.9	157236689	66298719	157236689	15834007983	12732283	15365321312	2.9600002191687667
EF04-EM05-Larvae_1	4.9	141036792	57485033	141036792	16650951594	13324125	16501419762	0.8980377557153085
EF04-EM05-Larvae_2	4.9	141036792	52994834	141036792	16672839400	19260988	16550049961	0.7364638742936611
EF05-EM01-Larvae_1	4.9	106485421	40971376	106485421	12339534259	8287264	12144367378	1.581638957383278
EF05-EM01-Larvae_2	4.9	106485421	36436144	106485421	12352646005	11628618	12220537897	1.0694721434300505
EF05-EM05-Zygote_1	4.9	121477726	48153655	121477726	13403302123	9713066	13267299745	1.0146930715425762
EF05-EM05-Zygote_2	4.9	121477726	46043360	121477726	13428682120	14098849	13316295818	0.8369123715618938
EF05-EM06-Larvae_1	4.9	198770863	77080399	198770863	25586716731	19958800	25372316727	0.8379348013035226
EF05-EM06-Larvae_2	4.9	198770863	71975658	198770863	25621883266	31090529	25443303083	0.6969830482249298
EF06-EM01-Larvae_1	4.9	142739602	59022412	142739602	16926122393	13461675	16762775300	0.965059150627164
EF06-EM01-Larvae_2	4.9	142739602	55038529	142739602	16966588149	21239806	16828058498	0.8164850221119138
EF06-EM02-Larvae_1	4.9	116122621	49637833	116122621	12878878567	9995458	12671046588	1.613742826433158
EF06-EM02-Larvae_2	4.9	116122621	45519593	116122621	12902985678	14631391	12751273143	1.1757940277239451
EF06-EM06-Larvae_1	4.9	161106516	67841898	161106516	17621938658	11126010	17432094140	1.0773191399903919
EF06-EM06-Larvae_2	4.9	161106516	62471866	161106516	17632752796	13886172	17498862266	0.7593285719423977
EF07-EM01-Zygote_1	4.9	241349617	92413207	241349617	27529308150	16248860	27327123232	0.7344351586983126
EF07-EM01-Zygote_2	4.9	241349617	87781889	241349617	27707845940	34809004	27512894744	0.7035956401019313
EF07-EM03-Larvae_1	4.9	129603536	49729236	129603536	14785449378	10907624	14686929789	0.666327999111019
EF07-EM03-Larvae_2	4.9	129603536	47130517	129603536	14841337568	20433823	14745225955	0.6475940093649651
EF08-EM03-Larvae_1	4.9	163523227	54770029	163523227	17079906729	12492620	16978869053	0.5915587104960472
EF08-EM03-Larvae_2	4.9	163523227	53116888	163523227	17188949418	25688996	17081151586	0.6271345000708175
EF08-EM04-Larvae_1	4.9	118672266	48566274	118672266	11994429087	9060818	11832081208	1.3535273569290476
EF08-EM04-Larvae_2	4.9	118672266	45207471	118672266	12026317739	13049741	11896022253	1.083419620433496