INFO:    Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred
INFO:    Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred
INFO:    Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
paired = 5938013
unpaired = 0
MERGED PAIRED END READS = 5938013
MATES PROCESSED = 11876026
TOTAL READS     = 5938013
DISTINCT READS  = 4.24784e+06
DISTINCT COUNTS = 41
MAX COUNT       = 144
COUNTS OF 1     = 3.02787e+06
MAX TERMS       = 24
OBSERVED COUNTS (145)
1	3027873
2	881048
3	246284
4	66893
5	18251
6	5066
7	1486
8	476
9	209
10	84
11	50
12	20
13	19
14	11
15	9
16	6
17	8
18	6
19	3
20	2
21	4
22	2
23	4
24	2
26	2
27	1
28	2
30	1
31	1
32	2
34	2
37	1
38	1
39	2
40	1
41	1
60	1
61	1
64	1
116	1
144	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
_..........._.._............_..__._.....__..................___._...__..
....._....._.........__._..._.__...._._.._...._...._....
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]