May-05 13:56:29.454 [main] DEBUG nextflow.cli.Launcher - Setting http proxy: ProxyConfig[protocol=http; host=klone-dip1; port=3128] May-05 13:56:29.528 [main] DEBUG nextflow.cli.Launcher - $> nextflow run nf-core/methylseq -c /gscratch/srlab/strigg/bin/uw_hyak_srlab.config --input /gscratch/scrubbed/strigg/analyses/20250502_methylseq/samplesheet.csv --outdir /gscratch/scrubbed/strigg/analyses/20250502_methylseq --fasta /gscratch/scrubbed/strigg/analyses/20250502_methylseq/data/genome/Cvirginica_v300.fa -resume -with-report nf_report.html -with-trace -with-timeline nf_timeline.html --skip_trimming --nomeseq May-05 13:56:29.681 [main] DEBUG nextflow.cli.CmdRun - N E X T F L O W ~ version 24.10.5 May-05 13:56:29.708 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/mmfs1/home/strigg/.nextflow/plugins; core-plugins: nf-amazon@2.9.2,nf-azure@1.10.2,nf-cloudcache@0.4.2,nf-codecommit@0.2.2,nf-console@1.1.4,nf-google@1.15.4,nf-tower@1.9.3,nf-wave@1.7.4 May-05 13:56:29.768 [main] INFO o.pf4j.DefaultPluginStatusProvider - Enabled plugins: [] May-05 13:56:29.769 [main] INFO o.pf4j.DefaultPluginStatusProvider - Disabled plugins: [] May-05 13:56:29.772 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode May-05 13:56:29.784 [main] INFO org.pf4j.AbstractPluginManager - No plugins May-05 13:56:29.794 [main] DEBUG nextflow.scm.ProviderConfig - Using SCM config path: /mmfs1/home/strigg/.nextflow/scm May-05 13:56:31.695 [main] DEBUG nextflow.scm.AssetManager - Git config: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/.git/config; branch: null; remote: origin; url: https://github.com/nf-core/methylseq.git May-05 13:56:31.757 [main] DEBUG nextflow.scm.RepositoryFactory - Found Git repository result: [RepositoryFactory] May-05 13:56:31.783 [main] DEBUG nextflow.scm.AssetManager - Git config: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/.git/config; branch: null; remote: origin; url: https://github.com/nf-core/methylseq.git May-05 13:56:33.086 [main] INFO nextflow.scm.AssetManager - NOTE: Your local project version looks outdated - a different revision is available in the remote repository [4415e90a60] May-05 13:56:33.119 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/nextflow.config May-05 13:56:33.121 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /gscratch/srlab/strigg/bin/uw_hyak_srlab.config May-05 13:56:33.122 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/nextflow.config May-05 13:56:33.123 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /gscratch/srlab/strigg/bin/uw_hyak_srlab.config May-05 13:56:33.148 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /mmfs1/home/strigg/.nextflow/secrets/store.json May-05 13:56:33.151 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@16f0ec18] - activable => nextflow.secret.LocalSecretsProvider@16f0ec18 May-05 13:56:33.180 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard` May-05 13:56:36.598 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard` May-05 13:56:36.696 [main] WARN nextflow.config.ConfigBuilder - It appears you have never run this project before -- Option `-resume` is ignored May-05 13:56:36.932 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 by global default May-05 13:56:36.933 [main] DEBUG nextflow.cli.CmdRun - Launching `https://github.com/nf-core/methylseq` [sharp_morse] DSL2 - revision: d16f8f81e8 [master] May-05 13:56:36.936 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins declared=[nf-schema@2.1.1] May-05 13:56:36.936 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[] May-05 13:56:36.936 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[nf-schema@2.1.1] May-05 13:56:36.936 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-schema version: 2.1.1 May-05 13:56:37.159 [main] INFO org.pf4j.AbstractPluginManager - Plugin 'nf-schema@2.1.1' resolved May-05 13:56:37.159 [main] INFO org.pf4j.AbstractPluginManager - Start plugin 'nf-schema@2.1.1' May-05 13:56:37.351 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-schema@2.1.1 May-05 13:56:37.579 [main] DEBUG nextflow.Session - Session UUID: 85e91eab-1e86-4619-b761-269708bade65 May-05 13:56:37.579 [main] DEBUG nextflow.Session - Run name: sharp_morse May-05 13:56:37.580 [main] DEBUG nextflow.Session - Executor pool size: 2 May-05 13:56:37.588 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null May-05 13:56:37.592 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=10; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false May-05 13:56:37.824 [main] DEBUG nextflow.cli.CmdRun - Version: 24.10.5 build 5935 Created: 04-03-2025 17:55 UTC (09:55 PDT) System: Linux 4.18.0-513.18.1.el8_9.x86_64 Runtime: Groovy 4.0.23 on OpenJDK 64-Bit Server VM 17.0.14-internal+0-adhoc..src Encoding: UTF-8 (UTF-8) Process: 90459@n3439 [10.64.66.183] CPUs: 1 - Mem: 50 GB (49.5 GB) - Swap: 74.5 GB (73.9 GB) May-05 13:56:37.955 [main] DEBUG nextflow.Session - Work-dir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work [gpfs] May-05 13:56:37.956 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/bin May-05 13:56:37.965 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[] May-05 13:56:37.988 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory May-05 13:56:38.082 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory May-05 13:56:38.090 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 2; maxThreads: 1000 May-05 13:56:38.325 [main] DEBUG nextflow.Session - Session start May-05 13:56:38.327 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow started -- trace file: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/pipeline_trace.txt May-05 13:56:38.663 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution May-05 13:56:40.300 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema May-05 13:56:40.946 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryLog:paramsSummaryLog]; plugin Id: nf-schema May-05 13:56:40.964 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [validateParameters:validateParameters]; plugin Id: nf-schema May-05 13:56:40.966 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema May-05 13:56:40.966 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [samplesheetToList:samplesheetToList]; plugin Id: nf-schema May-05 13:56:44.237 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryLog:paramsSummaryLog]; plugin Id: nf-schema May-05 13:56:44.237 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [validateParameters:validateParameters]; plugin Id: nf-schema May-05 13:56:44.239 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema May-05 13:56:44.239 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [samplesheetToList:samplesheetToList]; plugin Id: nf-schema May-05 13:56:44.852 [main] INFO nextflow.Nextflow - ------------------------------------------------------ ,--./,-.  ___ __ __ __ ___ /,-._.--~'  |\ | |__ __ / ` / \ |__) |__ } {  | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,'  nf-core/methylseq 2.7.1 ------------------------------------------------------ Input/output options input : /gscratch/scrubbed/strigg/analyses/20250502_methylseq/samplesheet.csv outdir : /gscratch/scrubbed/strigg/analyses/20250502_methylseq Reference genome options fasta : /gscratch/scrubbed/strigg/analyses/20250502_methylseq/data/genome/Cvirginica_v300.fa Bismark options nomeseq : true Skip pipeline steps skip_trimming : true Institutional config options config_profile_description: UW Hyak Roberts labs cluster profile provided by nf-core/configs. config_profile_contact : Shelly A. Wanamaker @shellywanamaker config_profile_url : https://faculty.washington.edu/sr320/ Core Nextflow options revision : master runName : sharp_morse containerEngine : singularity launchDir : /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq workDir : /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work projectDir : /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq userName : strigg profile : standard configFiles :  !! Only displaying parameters that differ from the pipeline defaults !! ------------------------------------------------------ * The pipeline https://doi.org/10.5281/zenodo.1343417 * The nf-core framework https://doi.org/10.1038/s41587-020-0439-x * Software dependencies https://github.com/nf-core/methylseq/blob/master/CITATIONS.md May-05 13:56:44.905 [main] DEBUG nextflow.validation.SchemaValidator - Starting parameters validation May-05 13:56:45.205 [main] DEBUG nextflow.validation.SchemaEvaluator - Started validating /gscratch/scrubbed/strigg/analyses/20250502_methylseq/samplesheet.csv May-05 13:56:45.358 [main] DEBUG nextflow.validation.SchemaEvaluator - Validation of file '/gscratch/scrubbed/strigg/analyses/20250502_methylseq/samplesheet.csv' passed! May-05 13:56:45.359 [main] DEBUG n.v.FormatDirectoryPathEvaluator - Cloud blob storage paths are not supported by 'FormatDirectoryPathEvaluator': 's3://ngi-igenomes/igenomes/' May-05 13:56:45.360 [main] DEBUG nextflow.validation.SchemaValidator - Finishing parameters validation May-05 13:56:45.664 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION May-05 13:56:45.666 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:BISMARK_GENOMEPREPARATION` matches process NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION May-05 13:56:45.691 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:45.692 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:45.712 [main] DEBUG nextflow.executor.Executor - [warm up] executor > slurm May-05 13:56:45.716 [main] DEBUG n.processor.TaskPollingMonitor - Creating task monitor for executor 'slurm' > capacity: 100; pollInterval: 5s; dumpInterval: 5m May-05 13:56:45.717 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: slurm) May-05 13:56:45.718 [main] DEBUG n.processor.TaskPollingMonitor - Creating submit rate limit of 1 submissions per 1 seconds May-05 13:56:45.761 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m May-05 13:56:45.847 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ May-05 13:56:45.850 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:45.850 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:45.871 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_METHYLSEQ:METHYLSEQ:FASTQC May-05 13:56:45.872 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:FASTQC` matches process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC May-05 13:56:45.876 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:45.876 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:45.954 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN May-05 13:56:45.954 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:BISMARK_ALIGN` matches process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN May-05 13:56:45.959 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:45.959 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:45.986 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_SORT_ALIGNED May-05 13:56:46.002 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:SAMTOOLS_SORT` matches process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_SORT_ALIGNED May-05 13:56:46.006 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.006 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.032 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_DEDUPLICATE May-05 13:56:46.034 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:BISMARK_DEDUPLICATE` matches process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_DEDUPLICATE May-05 13:56:46.039 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.039 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.069 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_METHYLATIONEXTRACTOR May-05 13:56:46.071 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:BISMARK_METHYLATIONEXTRACTOR` matches process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_METHYLATIONEXTRACTOR May-05 13:56:46.085 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.085 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.132 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_COVERAGE2CYTOSINE May-05 13:56:46.133 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:BISMARK_COVERAGE2CYTOSINE` matches process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_COVERAGE2CYTOSINE May-05 13:56:46.135 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.135 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.177 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_REPORT May-05 13:56:46.179 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:BISMARK_REPORT` matches process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_REPORT May-05 13:56:46.182 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.182 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.217 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_SUMMARY May-05 13:56:46.219 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:BISMARK_SUMMARY` matches process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_SUMMARY May-05 13:56:46.226 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.227 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.253 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_SORT_DEDUPLICATED May-05 13:56:46.254 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:SAMTOOLS_SORT` matches process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_SORT_DEDUPLICATED May-05 13:56:46.263 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:SAMTOOLS_SORT_DEDUPLICATED` matches process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_SORT_DEDUPLICATED May-05 13:56:46.266 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.266 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.303 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_INDEX_DEDUPLICATED May-05 13:56:46.304 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:SAMTOOLS_INDEX_DEDUPLICATED` matches process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_INDEX_DEDUPLICATED May-05 13:56:46.311 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.312 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.424 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_METHYLSEQ:METHYLSEQ:QUALIMAP_BAMQC May-05 13:56:46.425 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:QUALIMAP_BAMQC` matches process NFCORE_METHYLSEQ:METHYLSEQ:QUALIMAP_BAMQC May-05 13:56:46.427 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.427 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.465 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single,error_retry` for process with name NFCORE_METHYLSEQ:METHYLSEQ:PRESEQ_LCEXTRAP May-05 13:56:46.466 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:error_retry` matches labels `process_single,error_retry` for process with name NFCORE_METHYLSEQ:METHYLSEQ:PRESEQ_LCEXTRAP May-05 13:56:46.466 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PRESEQ_LCEXTRAP` matches process NFCORE_METHYLSEQ:METHYLSEQ:PRESEQ_LCEXTRAP May-05 13:56:46.468 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.468 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.694 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC May-05 13:56:46.694 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MULTIQC` matches process NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC May-05 13:56:46.709 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm May-05 13:56:46.709 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' May-05 13:56:46.725 [main] DEBUG nextflow.Session - Config process names validation disabled as requested May-05 13:56:46.729 [main] DEBUG nextflow.Session - Igniting dataflow network (32) May-05 13:56:46.741 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION May-05 13:56:46.806 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:CAT_FASTQ May-05 13:56:46.806 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC May-05 13:56:46.806 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN May-05 13:56:46.806 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_SORT_ALIGNED May-05 13:56:46.806 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_DEDUPLICATE May-05 13:56:46.846 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_METHYLATIONEXTRACTOR May-05 13:56:46.852 [Actor Thread 8] DEBUG nextflow.container.SingularityCache - Singularity found local store for image=https://depot.galaxyproject.org/singularity/fastqc:0.12.1--hdfd78af_0; path=/gscratch/scrubbed/srlab/.apptainer/depot.galaxyproject.org-singularity-fastqc-0.12.1--hdfd78af_0.img May-05 13:56:46.877 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_COVERAGE2CYTOSINE May-05 13:56:46.877 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_REPORT May-05 13:56:46.877 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_SUMMARY May-05 13:56:46.878 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_SORT_DEDUPLICATED May-05 13:56:46.878 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_INDEX_DEDUPLICATED May-05 13:56:46.878 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:QUALIMAP_BAMQC May-05 13:56:46.907 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:PRESEQ_LCEXTRAP May-05 13:56:46.917 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC May-05 13:56:47.025 [Actor Thread 8] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 1; slices: 1; internal sort time: 0.001 s; external sort time: 0.008 s; total time: 0.009 s May-05 13:56:47.029 [Actor Thread 15] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 1; slices: 1; internal sort time: 0.0 s; external sort time: 0.0 s; total time: 0.0 s May-05 13:56:47.042 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files: Script_0996388d892bd19a: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bwameth/../../../modules/nf-core/samtools/flagstat/main.nf Script_0ce72e734ad77725: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/utils_nfcore_methylseq_pipeline/../../nf-core/utils_nextflow_pipeline/main.nf Script_f289bdfe26d7f1cf: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../modules/nf-core/fastqc/main.nf Script_215a636da7ab24a2: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/utils_nfcore_methylseq_pipeline/../../nf-core/utils_nfschema_plugin/main.nf Script_602baca37dbec7fa: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bwameth/../../../modules/nf-core/bwameth/align/main.nf Script_0511bbb25db27a06: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bismark/../../../modules/nf-core/bismark/summary/main.nf Script_cf2fde54a296bd6d: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bismark/../../../modules/nf-core/bismark/report/main.nf Script_de1c7c124fa4c7b4: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bismark/../../../modules/nf-core/samtools/sort/main.nf Script_b574e7a64b16aa0f: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bwameth/main.nf Script_7a66424f9cfe9c28: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../modules/nf-core/cat/fastq/main.nf Script_3ff1656b1d66c1f2: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bismark/../../../modules/nf-core/samtools/index/main.nf Script_4955288afd8ca61e: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../modules/nf-core/multiqc/main.nf Script_07f30463134bb160: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bwameth/../../../modules/nf-core/methyldackel/mbias/main.nf Script_6fbcf8477f9d7d4c: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./subworkflows/local/utils_nfcore_methylseq_pipeline/../../nf-core/utils_nfcore_pipeline/main.nf Script_d2bd6ed8cca7a299: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bismark/main.nf Script_ce73824d8d37c8f9: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bwameth/../../../modules/nf-core/picard/markduplicates/main.nf Script_c3d87fe95b06eaac: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/utils_nfcore_methylseq_pipeline/main.nf Script_0a7ae43f787fd483: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bismark/../../../modules/nf-core/bismark/coverage2cytosine/main.nf Script_7cf94f7c098d7f35: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/main.nf Script_1c7d7a4569b86317: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bwameth/../../../modules/nf-core/samtools/stats/main.nf Script_223ca400878df5b0: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./subworkflows/local/prepare_genome/../../../modules/nf-core/untar/main.nf Script_75bf6efa279c92ef: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./subworkflows/local/prepare_genome/main.nf Script_a7a5a84f7a880e52: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bismark/../../../modules/nf-core/bismark/methylationextractor/main.nf Script_4a952f32aa70c946: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../modules/nf-core/qualimap/bamqc/main.nf Script_9a9bbd56a58e59b6: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bismark/../../../modules/nf-core/bismark/align/main.nf Script_673b2e708fc3977b: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/main.nf Script_0fad36d8a8910f17: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bismark/../../../modules/nf-core/bismark/deduplicate/main.nf Script_bfcc6b499d31082a: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../modules/nf-core/trimgalore/main.nf Script_cd4906dd24febbaa: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../modules/nf-core/preseq/lcextrap/main.nf Script_668d1f0d214380c6: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./subworkflows/local/prepare_genome/../../../modules/nf-core/samtools/faidx/main.nf Script_a6b84a8d8db37c9d: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./subworkflows/local/prepare_genome/../../../modules/nf-core/gunzip/main.nf Script_116642f9cab8d3cb: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./workflows/methylseq/../../subworkflows/local/bwameth/../../../modules/nf-core/methyldackel/extract/main.nf Script_5941de80eaf53e68: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./subworkflows/local/prepare_genome/../../../modules/nf-core/bwameth/index/main.nf Script_e600d5ed42512faf: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/./subworkflows/local/prepare_genome/../../../modules/nf-core/bismark/genomepreparation/main.nf May-05 13:56:47.059 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination May-05 13:56:47.059 [main] DEBUG nextflow.Session - Session await May-05 13:56:47.087 [Actor Thread 15] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/collect-file/6e528add45fc9314fa8bffd5afc25a6e May-05 13:56:47.093 [Actor Thread 8] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/collect-file/beab721bf6dd8080975fef1fefb172b3 May-05 13:56:47.097 [Actor Thread 15] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-3168271036098870396 May-05 13:56:47.099 [Actor Thread 8] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-9835271645902090500 May-05 13:56:47.127 [Actor Thread 14] DEBUG nextflow.container.SingularityCache - Singularity found local store for image=https://depot.galaxyproject.org/singularity/bismark:0.24.2--hdfd78af_0; path=/gscratch/scrubbed/srlab/.apptainer/depot.galaxyproject.org-singularity-bismark-0.24.2--hdfd78af_0.img May-05 13:56:48.933 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/48/00c87c7538ae6585bbc80394e6491b error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM01-Zygote)' for execution May-05 13:56:48.960 [Task submitter] INFO nextflow.processor.TaskProcessor - [48/00c87c] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM01-Zygote)' for execution -- Execution is retried (1) May-05 13:56:49.689 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/30/c29ba62634aaa0fb3d98505fed84c7 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae)' for execution May-05 13:56:49.697 [Task submitter] INFO nextflow.processor.TaskProcessor - [30/c29ba6] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae)' for execution -- Execution is retried (1) May-05 13:56:51.239 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/71/99e4c0bc9db09f1ada29c4a3df9212 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa)' for execution May-05 13:56:51.240 [Task submitter] INFO nextflow.processor.TaskProcessor - [71/99e4c0] NOTE: Error submitting process 'NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa)' for execution -- Execution is retried (1) May-05 13:56:52.795 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/b42a8c8391cb307799bfd25f40b79f error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote)' for execution May-05 13:56:52.798 [Task submitter] INFO nextflow.processor.TaskProcessor - [9a/b42a8c] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote)' for execution -- Execution is retried (1) May-05 13:56:54.366 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/fe/4d02800a75824fb7f11c8c81bd8140 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae)' for execution May-05 13:56:54.367 [Task submitter] INFO nextflow.processor.TaskProcessor - [fe/4d0280] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae)' for execution -- Execution is retried (1) May-05 13:56:56.112 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/64/8ceceb609f0719f2f18572ebccafc8 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote)' for execution May-05 13:56:56.112 [Task submitter] INFO nextflow.processor.TaskProcessor - [64/8ceceb] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote)' for execution -- Execution is retried (1) May-05 13:56:57.573 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/d6/4ee4d38c61ad8e9cb3cbfc856bfb43 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM05-Larvae)' for execution May-05 13:56:57.573 [Task submitter] INFO nextflow.processor.TaskProcessor - [d6/4ee4d3] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM05-Larvae)' for execution -- Execution is retried (1) May-05 13:56:59.061 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/2e/e0d1b7d6c296a2b727da054500bdf9 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote)' for execution May-05 13:56:59.062 [Task submitter] INFO nextflow.processor.TaskProcessor - [2e/e0d1b7] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote)' for execution -- Execution is retried (1) May-05 13:57:00.619 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/e6/3b87436d2556e570bd452ebc5ff5aa error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae)' for execution May-05 13:57:00.619 [Task submitter] INFO nextflow.processor.TaskProcessor - [e6/3b8743] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae)' for execution -- Execution is retried (1) May-05 13:57:04.499 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/e8/120dc412a0b9bd9f577963d5f1fc42 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote)' for execution May-05 13:57:04.555 [Task submitter] INFO nextflow.processor.TaskProcessor - [e8/120dc4] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote)' for execution -- Execution is retried (1) May-05 13:57:06.073 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/c1/51a8101ed15c923a511b6e3ae67cdf error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM02-Larvae)' for execution May-05 13:57:06.074 [Task submitter] INFO nextflow.processor.TaskProcessor - [c1/51a810] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM02-Larvae)' for execution -- Execution is retried (1) May-05 13:57:07.612 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/56/25710057e259a96cccbd83d1958ea1 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM01-Zygote)' for execution May-05 13:57:07.613 [Task submitter] INFO nextflow.processor.TaskProcessor - [56/257100] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM01-Zygote)' for execution -- Execution is retried (1) May-05 13:57:09.253 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/04/ccc0ed318735bd9ad526d1719a3a00 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote)' for execution May-05 13:57:09.253 [Task submitter] INFO nextflow.processor.TaskProcessor - [04/ccc0ed] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote)' for execution -- Execution is retried (1) May-05 13:57:10.753 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/78/816bdba065b8042c1690276a1a0ac0 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM04-Larvae)' for execution May-05 13:57:10.754 [Task submitter] INFO nextflow.processor.TaskProcessor - [78/816bdb] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM04-Larvae)' for execution -- Execution is retried (1) May-05 13:57:12.289 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/1b/8b8175a63c36682808998cb4797b47 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM03-Zygote)' for execution May-05 13:57:12.290 [Task submitter] INFO nextflow.processor.TaskProcessor - [1b/8b8175] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM03-Zygote)' for execution -- Execution is retried (1) May-05 13:57:13.811 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/d8/1b2345297b4739fa378fcf018098c4 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM05-Larvae)' for execution May-05 13:57:13.813 [Task submitter] INFO nextflow.processor.TaskProcessor - [d8/1b2345] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM05-Larvae)' for execution -- Execution is retried (1) May-05 13:57:16.345 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF01-EM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/f1/9c01568f2f781e87ca086710afb2f8 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF01-EM01-Zygote)' for execution May-05 13:57:16.346 [Task submitter] INFO nextflow.processor.TaskProcessor - [f1/9c0156] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF01-EM01-Zygote)' for execution -- Execution is retried (1) May-05 13:57:17.874 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF02-EM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/2d/efe059186909b0084723f1b92cb953 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF02-EM02-Zygote)' for execution May-05 13:57:17.875 [Task submitter] INFO nextflow.processor.TaskProcessor - [2d/efe059] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF02-EM02-Zygote)' for execution -- Execution is retried (1) May-05 13:57:19.355 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/33/435fcc76eba1cc2f8722462a7d29fa error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM03-Zygote)' for execution May-05 13:57:19.356 [Task submitter] INFO nextflow.processor.TaskProcessor - [33/435fcc] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM03-Zygote)' for execution -- Execution is retried (1) May-05 13:57:20.472 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/3b/db871cf1ff0ab6b8b3a9453c40752d error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM05-Larvae)' for execution May-05 13:57:20.473 [Task submitter] INFO nextflow.processor.TaskProcessor - [3b/db871c] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM05-Larvae)' for execution -- Execution is retried (1) May-05 13:57:21.069 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/fb/8c04f1f83c0b0961346c7b39ab6f9d error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM04-Larvae)' for execution May-05 13:57:21.069 [Task submitter] INFO nextflow.processor.TaskProcessor - [fb/8c04f1] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM04-Larvae)' for execution -- Execution is retried (1) May-05 13:57:21.549 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM04-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/3e/80ec159b3d3598e20927c94264e5a2 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM04-Zygote)' for execution May-05 13:57:21.550 [Task submitter] INFO nextflow.processor.TaskProcessor - [3e/80ec15] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM04-Zygote)' for execution -- Execution is retried (1) May-05 13:57:22.358 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM01-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/52/ed94b63532844be5dabaf9e36c8be7 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM01-Larvae)' for execution May-05 13:57:22.407 [Task submitter] INFO nextflow.processor.TaskProcessor - [52/ed94b6] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM01-Larvae)' for execution -- Execution is retried (1) May-05 13:57:23.151 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/7c/ef6c7d6b8a81c4eaf6d3da40759e36 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM05-Larvae)' for execution May-05 13:57:23.152 [Task submitter] INFO nextflow.processor.TaskProcessor - [7c/ef6c7d] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM05-Larvae)' for execution -- Execution is retried (1) May-05 13:57:23.770 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM06-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/eb/4f7124a300506bd0c4f11702f1ecef error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM06-Larvae)' for execution May-05 13:57:23.770 [Task submitter] INFO nextflow.processor.TaskProcessor - [eb/4f7124] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM06-Larvae)' for execution -- Execution is retried (1) May-05 13:57:25.947 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM05-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/4e/bed32f025e53127c05199fd02a4a8b error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM05-Zygote)' for execution May-05 13:57:25.948 [Task submitter] INFO nextflow.processor.TaskProcessor - [4e/bed32f] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM05-Zygote)' for execution -- Execution is retried (1) May-05 13:57:27.423 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM01-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/a9/6cb94e5c9e78d42ad8c71f6b0b8f01 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM01-Larvae)' for execution May-05 13:57:27.424 [Task submitter] INFO nextflow.processor.TaskProcessor - [a9/6cb94e] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM01-Larvae)' for execution -- Execution is retried (1) May-05 13:57:28.871 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/d3/a71efc83f34ab87345a93733f020cd error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM02-Larvae)' for execution May-05 13:57:28.871 [Task submitter] INFO nextflow.processor.TaskProcessor - [d3/a71efc] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM02-Larvae)' for execution -- Execution is retried (1) May-05 13:57:30.281 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM06-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/c4/a83d0e795f23aa7f6004b0f56072d3 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM06-Larvae)' for execution May-05 13:57:30.304 [Task submitter] INFO nextflow.processor.TaskProcessor - [c4/a83d0e] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM06-Larvae)' for execution -- Execution is retried (1) May-05 13:57:31.717 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/b0/5c2d9c3fdcab2b50b091e77db7b071 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote)' for execution May-05 13:57:31.718 [Task submitter] INFO nextflow.processor.TaskProcessor - [b0/5c2d9c] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote)' for execution -- Execution is retried (1) May-05 13:57:33.104 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM03-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/d8/6aaf6936a375c5a8862831892ef767 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM03-Larvae)' for execution May-05 13:57:33.104 [Task submitter] INFO nextflow.processor.TaskProcessor - [d8/6aaf69] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM03-Larvae)' for execution -- Execution is retried (1) May-05 13:57:34.556 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM03-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/33/a8e6020b118444255ee38e200d0a87 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM03-Larvae)' for execution May-05 13:57:34.557 [Task submitter] INFO nextflow.processor.TaskProcessor - [33/a8e602] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM03-Larvae)' for execution -- Execution is retried (1) May-05 13:57:36.019 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/7e/94393f45fe4a47d5e4ba7e4e8b8c4d error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM04-Larvae)' for execution May-05 13:57:36.019 [Task submitter] INFO nextflow.processor.TaskProcessor - [7e/94393f] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM04-Larvae)' for execution -- Execution is retried (1) May-05 13:57:37.413 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ec/90e5c75d63e270b67c1dd0feacf316 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM01-Zygote)' for execution May-05 13:57:37.413 [Task submitter] INFO nextflow.processor.TaskProcessor - [ec/90e5c7] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM01-Zygote)' for execution -- Execution is retried (2) May-05 13:57:38.825 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/5a/e8ceacd8daafbb3c5ae393ba8c36dd error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae)' for execution May-05 13:57:38.836 [Task submitter] INFO nextflow.processor.TaskProcessor - [5a/e8ceac] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae)' for execution -- Execution is retried (2) May-05 13:57:40.441 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/a0/757e6026d6b8905eb0d8f40ecc7f62 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa)' for execution May-05 13:57:40.441 [Task submitter] INFO nextflow.processor.TaskProcessor - [a0/757e60] NOTE: Error submitting process 'NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa)' for execution -- Execution is retried (2) May-05 13:57:41.878 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/f8/d3ba2d5fd45770d94736641dd65e82 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote)' for execution May-05 13:57:41.879 [Task submitter] INFO nextflow.processor.TaskProcessor - [f8/d3ba2d] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote)' for execution -- Execution is retried (2) May-05 13:57:43.350 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/f4/baaa34ef2d2ea0026459882fc8fc40 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae)' for execution May-05 13:57:43.351 [Task submitter] INFO nextflow.processor.TaskProcessor - [f4/baaa34] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae)' for execution -- Execution is retried (2) May-05 13:57:44.748 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/b1/183f9a4eae7973b6791bd753b0c2a5 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote)' for execution May-05 13:57:44.749 [Task submitter] INFO nextflow.processor.TaskProcessor - [b1/183f9a] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote)' for execution -- Execution is retried (2) May-05 13:57:46.103 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/97/5a0f10c776bcfa6607a59e870ecac5 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM05-Larvae)' for execution May-05 13:57:46.104 [Task submitter] INFO nextflow.processor.TaskProcessor - [97/5a0f10] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM05-Larvae)' for execution -- Execution is retried (2) May-05 13:57:47.484 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/3a/743bf0ea4ea613c46b9a77e3d5ba86 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote)' for execution May-05 13:57:47.485 [Task submitter] INFO nextflow.processor.TaskProcessor - [3a/743bf0] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote)' for execution -- Execution is retried (2) May-05 13:57:48.986 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/61/7ad76a488d22d48860b3f38cfe03a3 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae)' for execution May-05 13:57:48.987 [Task submitter] INFO nextflow.processor.TaskProcessor - [61/7ad76a] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae)' for execution -- Execution is retried (2) May-05 13:57:50.441 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/b2/1829ce324d637479846a8f0ec23860 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote)' for execution May-05 13:57:50.441 [Task submitter] INFO nextflow.processor.TaskProcessor - [b2/1829ce] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote)' for execution -- Execution is retried (2) May-05 13:57:51.984 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/53/4e14339b4a65e5a488b000b001630f error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM02-Larvae)' for execution May-05 13:57:51.985 [Task submitter] INFO nextflow.processor.TaskProcessor - [53/4e1433] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM02-Larvae)' for execution -- Execution is retried (2) May-05 13:57:53.360 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/b8/1497c6fc4abc76ba7d832babd15693 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM01-Zygote)' for execution May-05 13:57:53.360 [Task submitter] INFO nextflow.processor.TaskProcessor - [b8/1497c6] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM01-Zygote)' for execution -- Execution is retried (2) May-05 13:57:54.703 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/3f/7768149d16d00efe967eac073c4caa error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote)' for execution May-05 13:57:54.704 [Task submitter] INFO nextflow.processor.TaskProcessor - [3f/776814] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote)' for execution -- Execution is retried (2) May-05 13:57:56.078 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/19/b29b0a191ab8b5d3c99c1bd032ff6c error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM04-Larvae)' for execution May-05 13:57:56.079 [Task submitter] INFO nextflow.processor.TaskProcessor - [19/b29b0a] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM04-Larvae)' for execution -- Execution is retried (2) May-05 13:57:57.423 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/61/3f328c5ca4f4db19d5e398bb3506cf error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM03-Zygote)' for execution May-05 13:57:57.424 [Task submitter] INFO nextflow.processor.TaskProcessor - [61/3f328c] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM03-Zygote)' for execution -- Execution is retried (2) May-05 13:57:58.478 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/e7/7c70f29224e11beea4de24eafd7e36 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM05-Larvae)' for execution May-05 13:57:58.479 [Task submitter] INFO nextflow.processor.TaskProcessor - [e7/7c70f2] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM05-Larvae)' for execution -- Execution is retried (2) May-05 13:57:59.916 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF01-EM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/92/c24acf749a887e5813eb5828f0f493 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF01-EM01-Zygote)' for execution May-05 13:57:59.916 [Task submitter] INFO nextflow.processor.TaskProcessor - [92/c24acf] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF01-EM01-Zygote)' for execution -- Execution is retried (2) May-05 13:58:03.371 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF02-EM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/92/290fe1631678d288c6d13ed9c5ce27 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF02-EM02-Zygote)' for execution May-05 13:58:03.372 [Task submitter] INFO nextflow.processor.TaskProcessor - [92/290fe1] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF02-EM02-Zygote)' for execution -- Execution is retried (2) May-05 13:58:04.813 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/e8/55c66fe443bed01ab77e7000a74f00 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM03-Zygote)' for execution May-05 13:58:04.813 [Task submitter] INFO nextflow.processor.TaskProcessor - [e8/55c66f] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM03-Zygote)' for execution -- Execution is retried (2) May-05 13:58:05.689 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/92/dbf849795e6394037df5be229323ae error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM05-Larvae)' for execution May-05 13:58:05.689 [Task submitter] INFO nextflow.processor.TaskProcessor - [92/dbf849] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM05-Larvae)' for execution -- Execution is retried (2) May-05 13:58:07.089 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/99/ca5823a771272411f00d60686849e5 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM04-Larvae)' for execution May-05 13:58:07.108 [Task submitter] INFO nextflow.processor.TaskProcessor - [99/ca5823] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM04-Larvae)' for execution -- Execution is retried (2) May-05 13:58:08.486 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM04-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/fb/b14f7b4cfb9bd9772cad0839581d2e error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM04-Zygote)' for execution May-05 13:58:08.487 [Task submitter] INFO nextflow.processor.TaskProcessor - [fb/b14f7b] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM04-Zygote)' for execution -- Execution is retried (2) May-05 13:58:09.904 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM01-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/eb/337a7acc588c71a8813f51b16d0dd3 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM01-Larvae)' for execution May-05 13:58:09.905 [Task submitter] INFO nextflow.processor.TaskProcessor - [eb/337a7a] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM01-Larvae)' for execution -- Execution is retried (2) May-05 13:58:11.365 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/10/6fe0faf154eb6cdb7c280921f8f275 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM05-Larvae)' for execution May-05 13:58:11.366 [Task submitter] INFO nextflow.processor.TaskProcessor - [10/6fe0fa] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM05-Larvae)' for execution -- Execution is retried (2) May-05 13:58:12.424 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM06-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/eb/2f4784491eb08d10b8b67360a7371a error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM06-Larvae)' for execution May-05 13:58:12.424 [Task submitter] INFO nextflow.processor.TaskProcessor - [eb/2f4784] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM06-Larvae)' for execution -- Execution is retried (2) May-05 13:58:13.887 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM05-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/dc/1b8415520a3b6e390e73152ec6a040 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM05-Zygote)' for execution May-05 13:58:13.887 [Task submitter] INFO nextflow.processor.TaskProcessor - [dc/1b8415] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM05-Zygote)' for execution -- Execution is retried (2) May-05 13:58:15.311 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM01-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/1a/8ebc1e1b7193ebd38c299cd0a082f3 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM01-Larvae)' for execution May-05 13:58:15.313 [Task submitter] INFO nextflow.processor.TaskProcessor - [1a/8ebc1e] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM01-Larvae)' for execution -- Execution is retried (2) May-05 13:58:16.735 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/4c/eac1cc641f4cebc5b1dd420daebbdc error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM02-Larvae)' for execution May-05 13:58:16.736 [Task submitter] INFO nextflow.processor.TaskProcessor - [4c/eac1cc] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM02-Larvae)' for execution -- Execution is retried (2) May-05 13:58:18.129 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM06-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/97/5595327e7bdbcb07f7fdb670a0cf7d error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM06-Larvae)' for execution May-05 13:58:18.130 [Task submitter] INFO nextflow.processor.TaskProcessor - [97/559532] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM06-Larvae)' for execution -- Execution is retried (2) May-05 13:58:19.612 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/c7/254ee9d0a4c74026f59ae4390fdcfd error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote)' for execution May-05 13:58:19.613 [Task submitter] INFO nextflow.processor.TaskProcessor - [c7/254ee9] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote)' for execution -- Execution is retried (2) May-05 13:58:20.293 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM03-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ea/03b2254476c78577603e0ab4bea315 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM03-Larvae)' for execution May-05 13:58:20.294 [Task submitter] INFO nextflow.processor.TaskProcessor - [ea/03b225] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM03-Larvae)' for execution -- Execution is retried (2) May-05 13:58:20.768 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM03-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/82/2bd28ae11eda94146e39fe0e19bf2b error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM03-Larvae)' for execution May-05 13:58:20.769 [Task submitter] INFO nextflow.processor.TaskProcessor - [82/2bd28a] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM03-Larvae)' for execution -- Execution is retried (2) May-05 13:58:21.457 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/de/3e5a418500f99e6b9968fe43b2f065 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM04-Larvae)' for execution May-05 13:58:21.458 [Task submitter] INFO nextflow.processor.TaskProcessor - [de/3e5a41] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM04-Larvae)' for execution -- Execution is retried (2) May-05 13:58:21.948 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM01-Zygote) > jobId: 25786349; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/6c/a33571796aed52760b88e40ab8204b May-05 13:58:21.949 [Task submitter] INFO nextflow.Session - [6c/a33571] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM01-Zygote) May-05 13:58:23.014 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae) > jobId: 25786350; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/03/bdf7e67cf3fcbab582eedeeea8a53d May-05 13:58:23.014 [Task submitter] INFO nextflow.Session - [03/bdf7e6] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae) May-05 13:58:24.165 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa) > jobId: 25786351; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/e9cdaa7518fcaff6639e82b6491876 May-05 13:58:24.166 [Task submitter] INFO nextflow.Session - [9a/e9cdaa] Re-submitted process > NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa) May-05 13:58:24.952 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote) > jobId: 25786352; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/91/821613effe0804972ba8b7f192752d May-05 13:58:24.953 [Task submitter] INFO nextflow.Session - [91/821613] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote) May-05 13:58:27.080 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae) > jobId: 25786359; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/89/38a4a53bb774e45463af0902765458 May-05 13:58:27.081 [Task submitter] INFO nextflow.Session - [89/38a4a5] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae) May-05 13:58:27.979 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote) > jobId: 25786360; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/90/da73cd1c6138862a772f44cb71a813 May-05 13:58:27.979 [Task submitter] INFO nextflow.Session - [90/da73cd] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote) May-05 13:58:29.394 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM05-Larvae) > jobId: 25786361; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/10/e77fe0724823b4388ae0a86a0d4511 May-05 13:58:29.395 [Task submitter] INFO nextflow.Session - [10/e77fe0] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM05-Larvae) May-05 13:58:30.853 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote) > jobId: 25786363; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/bd/d1ee00fbcc072b382286250d56c7e0 May-05 13:58:30.853 [Task submitter] INFO nextflow.Session - [bd/d1ee00] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote) May-05 13:58:32.370 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae) > jobId: 25786364; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/44/e563e881959d2d088ed1ed5a2bebe9 May-05 13:58:32.370 [Task submitter] INFO nextflow.Session - [44/e563e8] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae) May-05 13:58:33.846 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote) > jobId: 25786365; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/a7/99b4f219ea7b69a93b034daa9ac0de May-05 13:58:33.846 [Task submitter] INFO nextflow.Session - [a7/99b4f2] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote) May-05 13:58:35.271 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM02-Larvae) > jobId: 25786366; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/16498b707ca0298f1df22ce500c2a1 May-05 13:58:35.271 [Task submitter] INFO nextflow.Session - [9a/16498b] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM02-Larvae) May-05 13:58:36.709 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM01-Zygote) > jobId: 25786367; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/1f/887e14b8aac7851c921a05936316a8 May-05 13:58:36.709 [Task submitter] INFO nextflow.Session - [1f/887e14] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM01-Zygote) May-05 13:58:38.247 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote) > jobId: 25786368; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/22/17f4aba45f1e6e81c89a5fae308285 May-05 13:58:38.248 [Task submitter] INFO nextflow.Session - [22/17f4ab] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote) May-05 13:58:39.624 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM04-Larvae) > jobId: 25786369; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/fd/417135597f6f2925ef05dffb38ac06 May-05 13:58:39.625 [Task submitter] INFO nextflow.Session - [fd/417135] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM04-Larvae) May-05 13:58:41.077 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM03-Zygote) > jobId: 25786370; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/30/79fab4c26b78aa4a0c103172744376 May-05 13:58:41.078 [Task submitter] INFO nextflow.Session - [30/79fab4] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM03-Zygote) May-05 13:58:42.507 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM05-Larvae) > jobId: 25786371; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/49/436533bcbf5f384f0312b85d127954 May-05 13:58:42.508 [Task submitter] INFO nextflow.Session - [49/436533] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM05-Larvae) May-05 13:58:43.934 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF01-EM01-Zygote) > jobId: 25786372; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ee/2365dafb1a67fff22a62e6e2adaae7 May-05 13:58:43.934 [Task submitter] INFO nextflow.Session - [ee/2365da] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF01-EM01-Zygote) May-05 13:58:45.370 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF02-EM02-Zygote) > jobId: 25786373; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/a7acfb8387d2ba5a52407d5ed77dc9 May-05 13:58:45.370 [Task submitter] INFO nextflow.Session - [9a/a7acfb] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF02-EM02-Zygote) May-05 13:58:46.893 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM03-Zygote) > jobId: 25786374; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/c4/6ca769a174e0fe212c8757943556d9 May-05 13:58:46.935 [Task submitter] INFO nextflow.Session - [c4/6ca769] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM03-Zygote) May-05 13:58:48.329 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM05-Larvae) > jobId: 25786375; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/fb/2687e475eebdba5d815fb2f5fc6a14 May-05 13:58:48.330 [Task submitter] INFO nextflow.Session - [fb/2687e4] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM05-Larvae) May-05 13:58:49.734 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM04-Larvae) > jobId: 25786376; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/70/44cae34d80791c0877cf7b89b07f42 May-05 13:58:49.734 [Task submitter] INFO nextflow.Session - [70/44cae3] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM04-Larvae) May-05 13:58:51.151 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM04-Zygote) > jobId: 25786377; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/38/c39eab170399bbebd0640777a64a0c May-05 13:58:51.151 [Task submitter] INFO nextflow.Session - [38/c39eab] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM04-Zygote) May-05 13:58:52.494 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM01-Larvae) > jobId: 25786378; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/7c/4b1d0162bb1f998a1a9977c3eff1dd May-05 13:58:52.494 [Task submitter] INFO nextflow.Session - [7c/4b1d01] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM01-Larvae) May-05 13:58:53.944 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM05-Larvae) > jobId: 25786379; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/78/02fa2543a0f167e3e7749a71454870 May-05 13:58:53.944 [Task submitter] INFO nextflow.Session - [78/02fa25] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM05-Larvae) May-05 13:58:55.397 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM06-Larvae) > jobId: 25786380; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/6c/33386f26ce5064701ba5668c0923cc May-05 13:58:55.397 [Task submitter] INFO nextflow.Session - [6c/33386f] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM06-Larvae) May-05 13:58:56.883 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM05-Zygote) > jobId: 25786385; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/8e/4fc95f3615f516e4b614af7825236f May-05 13:58:56.884 [Task submitter] INFO nextflow.Session - [8e/4fc95f] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM05-Zygote) May-05 13:58:58.330 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM01-Larvae) > jobId: 25786389; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/00/9fa4d4ba458211ff610d983ea1e4ab May-05 13:58:58.331 [Task submitter] INFO nextflow.Session - [00/9fa4d4] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM01-Larvae) May-05 13:58:59.770 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM02-Larvae) > jobId: 25786390; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/48/dd1196f962e48baeafa24c60004c80 May-05 13:58:59.771 [Task submitter] INFO nextflow.Session - [48/dd1196] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM02-Larvae) May-05 13:59:01.258 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM06-Larvae) > jobId: 25786392; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/80/b70eb3a89e470b5e14d6177165b19e May-05 13:59:01.259 [Task submitter] INFO nextflow.Session - [80/b70eb3] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM06-Larvae) May-05 13:59:04.649 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote) > jobId: 25786393; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/8a/09314e6973586447ae303df719dd7f May-05 13:59:04.649 [Task submitter] INFO nextflow.Session - [8a/09314e] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote) May-05 13:59:06.065 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM03-Larvae) > jobId: 25786394; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ac/5284876698deb5920a9b64adbe1f67 May-05 13:59:06.065 [Task submitter] INFO nextflow.Session - [ac/528487] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM03-Larvae) May-05 13:59:07.476 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM03-Larvae) > jobId: 25786395; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/89/a6766537b876a80b240acbf94e5cbd May-05 13:59:07.476 [Task submitter] INFO nextflow.Session - [89/a67665] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM03-Larvae) May-05 13:59:09.011 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM04-Larvae) > jobId: 25786396; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/1a/1bd5b62d1bc5059ba0749c2d851a74 May-05 13:59:09.011 [Task submitter] INFO nextflow.Session - [1a/1bd5b6] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM04-Larvae) May-05 14:00:50.769 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786349; id: 67; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM01-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/6c/a33571796aed52760b88e40ab8204b started: 1746478705758; exited: 2025-05-05T21:00:50.120068107Z; ] May-05 14:00:50.793 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'TaskFinalizer' minSize=10; maxSize=10; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false May-05 14:00:52.589 [TaskFinalizer-1] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'PublishDir' minSize=10; maxSize=10; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false May-05 14:01:50.762 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 32 -- submitted tasks are shown below ~> TaskHandler[jobId: 25786350; id: 68; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/03/bdf7e67cf3fcbab582eedeeea8a53d started: 1746478707884; exited: -; ] ~> TaskHandler[jobId: 25786351; id: 69; name: NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/e9cdaa7518fcaff6639e82b6491876 started: 1746478710758; exited: -; ] ~> TaskHandler[jobId: 25786352; id: 70; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/91/821613effe0804972ba8b7f192752d started: 1746478710763; exited: -; ] ~> TaskHandler[jobId: 25786359; id: 71; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/89/38a4a53bb774e45463af0902765458 started: 1746478710768; exited: -; ] ~> TaskHandler[jobId: 25786360; id: 72; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/90/da73cd1c6138862a772f44cb71a813 started: 1746478710773; exited: -; ] ~> TaskHandler[jobId: 25786361; id: 73; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM05-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/10/e77fe0724823b4388ae0a86a0d4511 started: 1746478715758; exited: -; ] ~> TaskHandler[jobId: 25786363; id: 74; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/bd/d1ee00fbcc072b382286250d56c7e0 started: 1746478715764; exited: -; ] ~> TaskHandler[jobId: 25786364; id: 75; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/44/e563e881959d2d088ed1ed5a2bebe9 started: 1746478715769; exited: -; ] ~> TaskHandler[jobId: 25786365; id: 76; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/a7/99b4f219ea7b69a93b034daa9ac0de started: 1746478720759; exited: -; ] ~> TaskHandler[jobId: 25786366; id: 77; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM02-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/16498b707ca0298f1df22ce500c2a1 started: 1746478720767; exited: -; ] .. remaining tasks omitted. May-05 14:03:05.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786369; id: 80; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM04-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/fd/417135597f6f2925ef05dffb38ac06 started: 1746478720794; exited: 2025-05-05T21:03:01.851001199Z; ] May-05 14:05:25.787 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786371; id: 82; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM05-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/49/436533bcbf5f384f0312b85d127954 started: 1746478725766; exited: 2025-05-05T21:05:21.684266995Z; ] May-05 14:06:45.795 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786361; id: 73; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM05-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/10/e77fe0724823b4388ae0a86a0d4511 started: 1746478715758; exited: 2025-05-05T21:06:44.223683612Z; ] May-05 14:06:45.815 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786366; id: 77; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM02-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/16498b707ca0298f1df22ce500c2a1 started: 1746478720767; exited: 2025-05-05T21:06:41.218365927Z; ] May-05 14:06:50.784 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 28 -- submitted tasks are shown below ~> TaskHandler[jobId: 25786350; id: 68; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/03/bdf7e67cf3fcbab582eedeeea8a53d started: 1746478707884; exited: -; ] ~> TaskHandler[jobId: 25786351; id: 69; name: NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/e9cdaa7518fcaff6639e82b6491876 started: 1746478710758; exited: -; ] ~> TaskHandler[jobId: 25786352; id: 70; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/91/821613effe0804972ba8b7f192752d started: 1746478710763; exited: -; ] ~> TaskHandler[jobId: 25786359; id: 71; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/89/38a4a53bb774e45463af0902765458 started: 1746478710768; exited: -; ] ~> TaskHandler[jobId: 25786360; id: 72; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/90/da73cd1c6138862a772f44cb71a813 started: 1746478710773; exited: -; ] ~> TaskHandler[jobId: 25786363; id: 74; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/bd/d1ee00fbcc072b382286250d56c7e0 started: 1746478715764; exited: -; ] ~> TaskHandler[jobId: 25786364; id: 75; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/44/e563e881959d2d088ed1ed5a2bebe9 started: 1746478715769; exited: -; ] ~> TaskHandler[jobId: 25786365; id: 76; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/a7/99b4f219ea7b69a93b034daa9ac0de started: 1746478720759; exited: -; ] ~> TaskHandler[jobId: 25786367; id: 78; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM01-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/1f/887e14b8aac7851c921a05936316a8 started: 1746478720784; exited: -; ] ~> TaskHandler[jobId: 25786368; id: 79; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/22/17f4aba45f1e6e81c89a5fae308285 started: 1746478720789; exited: -; ] .. remaining tasks omitted. May-05 14:06:50.815 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786378; id: 89; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM01-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/7c/4b1d0162bb1f998a1a9977c3eff1dd started: 1746478735795; exited: 2025-05-05T21:06:48.188147126Z; ] May-05 14:07:00.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786396; id: 99; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM04-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/1a/1bd5b62d1bc5059ba0749c2d851a74 started: 1746478750803; exited: 2025-05-05T21:06:58.299205033Z; ] May-05 14:07:05.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786359; id: 71; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM04-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/89/38a4a53bb774e45463af0902765458 started: 1746478710768; exited: 2025-05-05T21:07:04.527709891Z; ] May-05 14:07:15.821 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786390; id: 94; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM02-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/48/dd1196f962e48baeafa24c60004c80 started: 1746478745769; exited: 2025-05-05T21:07:14.228548891Z; ] May-05 14:07:20.817 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786360; id: 72; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF03-CM03-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/90/da73cd1c6138862a772f44cb71a813 started: 1746478710773; exited: 2025-05-05T21:07:17.538566564Z; ] May-05 14:07:30.816 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786350; id: 68; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF01-CM02-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/03/bdf7e67cf3fcbab582eedeeea8a53d started: 1746478707884; exited: 2025-05-05T21:07:30.074026746Z; ] May-05 14:07:33.316 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786363; id: 74; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF04-CM04-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/bd/d1ee00fbcc072b382286250d56c7e0 started: 1746478715764; exited: 2025-05-05T21:07:32.153510327Z; ] May-05 14:07:40.820 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786372; id: 83; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF01-EM01-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ee/2365dafb1a67fff22a62e6e2adaae7 started: 1746478725773; exited: 2025-05-05T21:07:40.66535676Z; ] May-05 14:07:40.828 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786385; id: 92; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM05-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/8e/4fc95f3615f516e4b614af7825236f started: 1746478740778; exited: 2025-05-05T21:07:36.838680829Z; ] May-05 14:08:05.816 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786374; id: 85; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM03-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/c4/6ca769a174e0fe212c8757943556d9 started: 1746478730768; exited: 2025-05-05T21:08:04.279292667Z; ] May-05 14:08:15.817 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786373; id: 84; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF02-EM02-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/a7acfb8387d2ba5a52407d5ed77dc9 started: 1746478730759; exited: 2025-05-05T21:08:14.89560856Z; ] May-05 14:08:38.206 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786365; id: 76; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM05-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/a7/99b4f219ea7b69a93b034daa9ac0de started: 1746478720759; exited: 2025-05-05T21:08:35.043601188Z; ] May-05 14:08:38.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786376; id: 87; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM04-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/70/44cae34d80791c0877cf7b89b07f42 started: 1746478735760; exited: 2025-05-05T21:08:34.858875738Z; ] May-05 14:08:38.223 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786395; id: 98; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM03-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/89/a6766537b876a80b240acbf94e5cbd started: 1746478750797; exited: 2025-05-05T21:08:30.980889445Z; ] May-05 14:08:55.820 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786367; id: 78; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF06-CM01-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/1f/887e14b8aac7851c921a05936316a8 started: 1746478720784; exited: 2025-05-05T21:08:52.193121609Z; ] May-05 14:09:00.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786370; id: 81; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF08-CM03-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/30/79fab4c26b78aa4a0c103172744376 started: 1746478725760; exited: 2025-05-05T21:08:58.832168794Z; ] May-05 14:09:05.818 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786375; id: 86; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF03-EM05-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/fb/2687e475eebdba5d815fb2f5fc6a14 started: 1746478730778; exited: 2025-05-05T21:09:02.655552683Z; ] May-05 14:09:15.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786379; id: 90; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM05-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/78/02fa2543a0f167e3e7749a71454870 started: 1746478740761; exited: 2025-05-05T21:09:13.529169684Z; ] May-05 14:09:25.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786377; id: 88; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF04-EM04-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/38/c39eab170399bbebd0640777a64a0c started: 1746478735789; exited: 2025-05-05T21:09:24.042234674Z; ] May-05 14:09:30.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786389; id: 93; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM01-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/00/9fa4d4ba458211ff610d983ea1e4ab started: 1746478745765; exited: 2025-05-05T21:09:26.580818822Z; ] May-05 14:10:00.825 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786364; id: 75; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF05-CM02-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/44/e563e881959d2d088ed1ed5a2bebe9 started: 1746478715769; exited: 2025-05-05T21:10:00.424367464Z; ] May-05 14:10:10.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786392; id: 95; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF06-EM06-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/80/b70eb3a89e470b5e14d6177165b19e started: 1746478745774; exited: 2025-05-05T21:10:10.390742617Z; ] May-05 14:10:25.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786394; id: 97; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF08-EM03-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ac/5284876698deb5920a9b64adbe1f67 started: 1746478750762; exited: 2025-05-05T21:10:25.616176982Z; ] May-05 14:11:00.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786351; id: 69; name: NFCORE_METHYLSEQ:PREPARE_GENOME:BISMARK_GENOMEPREPARATION (BismarkIndex/Cvirginica_v300.fa); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/e9cdaa7518fcaff6639e82b6491876 started: 1746478710758; exited: 2025-05-05T21:11:00.401680692Z; ] May-05 14:11:02.458 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/dc/049918e694d4caba73228afc38b5c6 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM01-Zygote)' for execution May-05 14:11:02.478 [Task submitter] INFO nextflow.processor.TaskProcessor - [dc/049918] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM01-Zygote)' for execution -- Execution is retried (1) May-05 14:11:05.453 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF02-CM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/03/1c228abb2a8024de24649023f00394 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF02-CM02-Zygote)' for execution May-05 14:11:05.453 [Task submitter] INFO nextflow.processor.TaskProcessor - [03/1c228a] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF02-CM02-Zygote)' for execution -- Execution is retried (1) May-05 14:11:06.735 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/c2/86ec8df8acba65685978921f84fff1 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM03-Zygote)' for execution May-05 14:11:06.735 [Task submitter] INFO nextflow.processor.TaskProcessor - [c2/86ec8d] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM03-Zygote)' for execution -- Execution is retried (1) May-05 14:11:08.044 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/12/e529c624c93e97262aa9dc700f64bc error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM02-Larvae)' for execution May-05 14:11:08.045 [Task submitter] INFO nextflow.processor.TaskProcessor - [12/e529c6] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM02-Larvae)' for execution -- Execution is retried (1) May-05 14:11:09.321 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/59/524e90b358145a989c993843bb9477 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM04-Larvae)' for execution May-05 14:11:09.322 [Task submitter] INFO nextflow.processor.TaskProcessor - [59/524e90] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM04-Larvae)' for execution -- Execution is retried (1) May-05 14:11:10.701 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/94/b93a3ecbdba67a578aa39ffd623390 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM05-Larvae)' for execution May-05 14:11:10.701 [Task submitter] INFO nextflow.processor.TaskProcessor - [94/b93a3e] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM05-Larvae)' for execution -- Execution is retried (1) May-05 14:11:11.994 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF04-CM04-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/5a/7a29106821aa0b06fa312e1964dbff error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF04-CM04-Zygote)' for execution May-05 14:11:12.008 [Task submitter] INFO nextflow.processor.TaskProcessor - [5a/7a2910] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF04-CM04-Zygote)' for execution -- Execution is retried (1) May-05 14:11:13.305 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/7d/d951054ad7a508db96ba3d2cda7012 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM02-Larvae)' for execution May-05 14:11:13.306 [Task submitter] INFO nextflow.processor.TaskProcessor - [7d/d95105] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM02-Larvae)' for execution -- Execution is retried (1) May-05 14:11:14.615 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/2e/83b73c1dc1cc38aa15cfbcf138823a error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM01-Zygote)' for execution May-05 14:11:14.616 [Task submitter] INFO nextflow.processor.TaskProcessor - [2e/83b73c] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM01-Zygote)' for execution -- Execution is retried (1) May-05 14:11:16.043 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM05-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/c9/2faf0004bcb05db5a886aff45067d6 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM05-Zygote)' for execution May-05 14:11:16.044 [Task submitter] INFO nextflow.processor.TaskProcessor - [c9/2faf00] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM05-Zygote)' for execution -- Execution is retried (1) May-05 14:11:17.429 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF07-CM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ad/be9a9a359849d94882366cd1aa7695 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF07-CM02-Zygote)' for execution May-05 14:11:17.430 [Task submitter] INFO nextflow.processor.TaskProcessor - [ad/be9a9a] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF07-CM02-Zygote)' for execution -- Execution is retried (1) May-05 14:11:18.887 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/85/8efd0cdcf2440d60435f8bb980f8db error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM02-Larvae)' for execution May-05 14:11:18.888 [Task submitter] INFO nextflow.processor.TaskProcessor - [85/8efd0c] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM02-Larvae)' for execution -- Execution is retried (1) May-05 14:11:20.261 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/3e/b792b7b0035aca9f8aa63cffc3df9a error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM03-Zygote)' for execution May-05 14:11:20.262 [Task submitter] INFO nextflow.processor.TaskProcessor - [3e/b792b7] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM03-Zygote)' for execution -- Execution is retried (1) May-05 14:11:20.756 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/5d/528c4c624c80f81a2e99232308cdf3 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM04-Larvae)' for execution May-05 14:11:20.756 [Task submitter] INFO nextflow.processor.TaskProcessor - [5d/528c4c] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM04-Larvae)' for execution -- Execution is retried (1) May-05 14:11:21.314 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF01-EM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/2e/ade02f64456d2485ffa7c8d12586d0 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF01-EM01-Zygote)' for execution May-05 14:11:21.315 [Task submitter] INFO nextflow.processor.TaskProcessor - [2e/ade02f] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF01-EM01-Zygote)' for execution -- Execution is retried (1) May-05 14:11:21.596 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/92/bde28e4f85b9dc58b9308a2d8e069b error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM05-Larvae)' for execution May-05 14:11:21.597 [Task submitter] INFO nextflow.processor.TaskProcessor - [92/bde28e] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM05-Larvae)' for execution -- Execution is retried (1) May-05 14:11:23.233 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF02-EM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/c3/c23bfc6f5af22bf6704767ef4de419 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF02-EM02-Zygote)' for execution May-05 14:11:23.234 [Task submitter] INFO nextflow.processor.TaskProcessor - [c3/c23bfc] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF02-EM02-Zygote)' for execution -- Execution is retried (1) May-05 14:11:23.663 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/8c/b0ee7a7d2d98f8d40add5519a2c978 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM03-Zygote)' for execution May-05 14:11:23.664 [Task submitter] INFO nextflow.processor.TaskProcessor - [8c/b0ee7a] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM03-Zygote)' for execution -- Execution is retried (1) May-05 14:11:24.820 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/7f/69f4937ad16aa81c3596989ce5232c error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM04-Larvae)' for execution May-05 14:11:24.821 [Task submitter] INFO nextflow.processor.TaskProcessor - [7f/69f493] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM04-Larvae)' for execution -- Execution is retried (1) May-05 14:11:26.535 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/3a/b18761b9fcf4b053c67d12c7864c1e error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM05-Larvae)' for execution May-05 14:11:26.536 [Task submitter] INFO nextflow.processor.TaskProcessor - [3a/b18761] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM05-Larvae)' for execution -- Execution is retried (1) May-05 14:11:27.901 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM04-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/5d/660ce77e6365c4657c4981caab973e error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM04-Zygote)' for execution May-05 14:11:27.901 [Task submitter] INFO nextflow.processor.TaskProcessor - [5d/660ce7] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM04-Zygote)' for execution -- Execution is retried (1) May-05 14:11:29.219 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/be/09770f8ab0cbee7d28a340ed7b58f5 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM05-Larvae)' for execution May-05 14:11:29.220 [Task submitter] INFO nextflow.processor.TaskProcessor - [be/09770f] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM05-Larvae)' for execution -- Execution is retried (1) May-05 14:11:29.674 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM01-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/a3/5235d6783df27eebcd18e6b24e3340 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM01-Larvae)' for execution May-05 14:11:29.674 [Task submitter] INFO nextflow.processor.TaskProcessor - [a3/5235d6] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM01-Larvae)' for execution -- Execution is retried (1) May-05 14:11:30.560 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM05-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9a/e4b26c15076a2cce6402218e1780f1 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM05-Zygote)' for execution May-05 14:11:30.576 [Task submitter] INFO nextflow.processor.TaskProcessor - [9a/e4b26c] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM05-Zygote)' for execution -- Execution is retried (1) May-05 14:11:31.514 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM06-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/d6/11757568244593e9bbf9657edeba5f error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM06-Larvae)' for execution May-05 14:11:31.515 [Task submitter] INFO nextflow.processor.TaskProcessor - [d6/117575] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM06-Larvae)' for execution -- Execution is retried (1) May-05 14:11:32.061 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM01-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/b7/4231c5f678c5783f12880404e09eca error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM01-Larvae)' for execution May-05 14:11:32.062 [Task submitter] INFO nextflow.processor.TaskProcessor - [b7/4231c5] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM01-Larvae)' for execution -- Execution is retried (1) May-05 14:11:33.616 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/d1/03c3df014839d4d9d5bb02e5045104 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM02-Larvae)' for execution May-05 14:11:33.616 [Task submitter] INFO nextflow.processor.TaskProcessor - [d1/03c3df] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM02-Larvae)' for execution -- Execution is retried (1) May-05 14:11:34.951 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM06-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/26/ebb143f973275ae07d3206698d11e2 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM06-Larvae)' for execution May-05 14:11:34.952 [Task submitter] INFO nextflow.processor.TaskProcessor - [26/ebb143] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM06-Larvae)' for execution -- Execution is retried (1) May-05 14:11:36.088 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/39/2de26e828d6f35a2aeec23faaa4088 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM01-Zygote)' for execution May-05 14:11:36.089 [Task submitter] INFO nextflow.processor.TaskProcessor - [39/2de26e] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM01-Zygote)' for execution -- Execution is retried (1) May-05 14:11:36.843 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM03-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ba/878e03880325d30e68707229d7e754 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM03-Larvae)' for execution May-05 14:11:36.845 [Task submitter] INFO nextflow.processor.TaskProcessor - [ba/878e03] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM03-Larvae)' for execution -- Execution is retried (1) May-05 14:11:37.579 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM03-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/f4/89d2c711869e08a11a6969b1fb4337 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM03-Larvae)' for execution May-05 14:11:37.580 [Task submitter] INFO nextflow.processor.TaskProcessor - [f4/89d2c7] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM03-Larvae)' for execution -- Execution is retried (1) May-05 14:11:38.937 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/26/a7f93dc314e5a48110a78d30e71694 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM04-Larvae)' for execution May-05 14:11:38.937 [Task submitter] INFO nextflow.processor.TaskProcessor - [26/a7f93d] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM04-Larvae)' for execution -- Execution is retried (1) May-05 14:11:40.362 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/d9/253425cd170fc6481615ac176cf227 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM01-Zygote)' for execution May-05 14:11:40.362 [Task submitter] INFO nextflow.processor.TaskProcessor - [d9/253425] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM01-Zygote)' for execution -- Execution is retried (2) May-05 14:11:41.663 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF02-CM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/36/d1116dd9d0ea17846a696f5c552f1f error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF02-CM02-Zygote)' for execution May-05 14:11:41.664 [Task submitter] INFO nextflow.processor.TaskProcessor - [36/d1116d] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF02-CM02-Zygote)' for execution -- Execution is retried (2) May-05 14:11:42.995 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/a0/7e725ae48bc31ddb03c257d51b472d error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM03-Zygote)' for execution May-05 14:11:42.996 [Task submitter] INFO nextflow.processor.TaskProcessor - [a0/7e725a] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM03-Zygote)' for execution -- Execution is retried (2) May-05 14:11:43.389 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/42/babc6e813606c15db83711da22767e error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM02-Larvae)' for execution May-05 14:11:43.392 [Task submitter] INFO nextflow.processor.TaskProcessor - [42/babc6e] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM02-Larvae)' for execution -- Execution is retried (2) May-05 14:11:43.788 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/e7/eda6dd7e69323fa82a846efdef3c74 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM04-Larvae)' for execution May-05 14:11:43.788 [Task submitter] INFO nextflow.processor.TaskProcessor - [e7/eda6dd] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM04-Larvae)' for execution -- Execution is retried (2) May-05 14:11:45.275 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/f9/0dca3f94cad9727517c482c2ae0321 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM05-Larvae)' for execution May-05 14:11:45.276 [Task submitter] INFO nextflow.processor.TaskProcessor - [f9/0dca3f] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM05-Larvae)' for execution -- Execution is retried (2) May-05 14:11:46.563 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF04-CM04-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/27/943f28c49f576c66c52d57a95406db error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF04-CM04-Zygote)' for execution May-05 14:11:46.564 [Task submitter] INFO nextflow.processor.TaskProcessor - [27/943f28] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF04-CM04-Zygote)' for execution -- Execution is retried (2) May-05 14:11:47.876 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/d1/5f60a660edc841ff92aae0b3232e71 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM02-Larvae)' for execution May-05 14:11:47.876 [Task submitter] INFO nextflow.processor.TaskProcessor - [d1/5f60a6] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM02-Larvae)' for execution -- Execution is retried (2) May-05 14:11:49.427 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/7b/91b04ef47faaa28c0b701a126f9ffa error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM01-Zygote)' for execution May-05 14:11:49.428 [Task submitter] INFO nextflow.processor.TaskProcessor - [7b/91b04e] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM01-Zygote)' for execution -- Execution is retried (2) May-05 14:11:50.763 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM05-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/95/00ba45d2a233e50801f25c4ec185ab error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM05-Zygote)' for execution May-05 14:11:50.786 [Task submitter] INFO nextflow.processor.TaskProcessor - [95/00ba45] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM05-Zygote)' for execution -- Execution is retried (2) May-05 14:11:50.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 4 -- submitted tasks are shown below ~> TaskHandler[jobId: 25786352; id: 70; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/91/821613effe0804972ba8b7f192752d started: 1746478710763; exited: -; ] ~> TaskHandler[jobId: 25786368; id: 79; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/22/17f4aba45f1e6e81c89a5fae308285 started: 1746478720789; exited: -; ] ~> TaskHandler[jobId: 25786380; id: 91; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM06-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/6c/33386f26ce5064701ba5668c0923cc started: 1746478740770; exited: -; ] ~> TaskHandler[jobId: 25786393; id: 96; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/8a/09314e6973586447ae303df719dd7f started: 1746478745780; exited: -; ] May-05 14:11:52.132 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF07-CM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/cc/e5e733d6ba21dc3a39ea75e7fcffd1 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF07-CM02-Zygote)' for execution May-05 14:11:52.133 [Task submitter] INFO nextflow.processor.TaskProcessor - [cc/e5e733] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF07-CM02-Zygote)' for execution -- Execution is retried (2) May-05 14:11:53.581 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/6d/ebc0aa9c799aa1e5fa48a9e1e026a8 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM02-Larvae)' for execution May-05 14:11:53.581 [Task submitter] INFO nextflow.processor.TaskProcessor - [6d/ebc0aa] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM02-Larvae)' for execution -- Execution is retried (2) May-05 14:11:54.944 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/58/ad04fe88a3adc6f07915d9742042b8 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM03-Zygote)' for execution May-05 14:11:54.944 [Task submitter] INFO nextflow.processor.TaskProcessor - [58/ad04fe] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM03-Zygote)' for execution -- Execution is retried (2) May-05 14:11:56.310 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/26/3383923ce80c33fa59af29e4e73745 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM04-Larvae)' for execution May-05 14:11:56.325 [Task submitter] INFO nextflow.processor.TaskProcessor - [26/338392] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM04-Larvae)' for execution -- Execution is retried (2) May-05 14:11:57.653 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF01-EM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/52/b77f7e670717ad96b0795dc4f18f0e error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF01-EM01-Zygote)' for execution May-05 14:11:57.654 [Task submitter] INFO nextflow.processor.TaskProcessor - [52/b77f7e] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF01-EM01-Zygote)' for execution -- Execution is retried (2) May-05 14:11:58.962 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/e4/4c56c7016045b506606ff5d09ef46d error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM05-Larvae)' for execution May-05 14:11:58.963 [Task submitter] INFO nextflow.processor.TaskProcessor - [e4/4c56c7] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM05-Larvae)' for execution -- Execution is retried (2) May-05 14:12:00.311 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF02-EM02-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/01/d5da1bde351635d9981d39f1bf9223 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF02-EM02-Zygote)' for execution May-05 14:12:00.312 [Task submitter] INFO nextflow.processor.TaskProcessor - [01/d5da1b] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF02-EM02-Zygote)' for execution -- Execution is retried (2) May-05 14:12:01.642 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM03-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/52/f076b964953870f96e03194ac9070b error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM03-Zygote)' for execution May-05 14:12:01.642 [Task submitter] INFO nextflow.processor.TaskProcessor - [52/f076b9] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM03-Zygote)' for execution -- Execution is retried (2) May-05 14:12:02.997 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/cb/622fc8fd76f371be54b299d38f5415 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM04-Larvae)' for execution May-05 14:12:02.998 [Task submitter] INFO nextflow.processor.TaskProcessor - [cb/622fc8] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM04-Larvae)' for execution -- Execution is retried (2) May-05 14:12:06.365 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/27/2140432b151430546b7233974e0bf8 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM05-Larvae)' for execution May-05 14:12:06.372 [Task submitter] INFO nextflow.processor.TaskProcessor - [27/214043] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM05-Larvae)' for execution -- Execution is retried (2) May-05 14:12:06.845 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM04-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/de/00fe8b22bdd2753aa26b468bedcf69 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM04-Zygote)' for execution May-05 14:12:06.846 [Task submitter] INFO nextflow.processor.TaskProcessor - [de/00fe8b] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM04-Zygote)' for execution -- Execution is retried (2) May-05 14:12:07.325 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM05-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/90/8ba1990305f7eb5b540c17e852f0f6 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM05-Larvae)' for execution May-05 14:12:07.325 [Task submitter] INFO nextflow.processor.TaskProcessor - [90/8ba199] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM05-Larvae)' for execution -- Execution is retried (2) May-05 14:12:08.713 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM01-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/3c/cd48be099d83f9cb0e0163bbc43884 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM01-Larvae)' for execution May-05 14:12:08.713 [Task submitter] INFO nextflow.processor.TaskProcessor - [3c/cd48be] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM01-Larvae)' for execution -- Execution is retried (2) May-05 14:12:10.094 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM05-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/14/e97350eacef7bebfdc2b2dac967cb4 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM05-Zygote)' for execution May-05 14:12:10.095 [Task submitter] INFO nextflow.processor.TaskProcessor - [14/e97350] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM05-Zygote)' for execution -- Execution is retried (2) May-05 14:12:11.479 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM06-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ae/abb7d872490befb245274e64bb3fd4 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM06-Larvae)' for execution May-05 14:12:11.480 [Task submitter] INFO nextflow.processor.TaskProcessor - [ae/abb7d8] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM06-Larvae)' for execution -- Execution is retried (2) May-05 14:12:12.845 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM01-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/1f/27ddbd103b69948a62147e41379b87 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM01-Larvae)' for execution May-05 14:12:12.878 [Task submitter] INFO nextflow.processor.TaskProcessor - [1f/27ddbd] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM01-Larvae)' for execution -- Execution is retried (2) May-05 14:12:14.236 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM02-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/f8/ef2e167244c62a8e2637b5edef88d9 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM02-Larvae)' for execution May-05 14:12:14.237 [Task submitter] INFO nextflow.processor.TaskProcessor - [f8/ef2e16] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM02-Larvae)' for execution -- Execution is retried (2) May-05 14:12:15.583 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM06-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/bc/87fa6c0c879c2f7207cb3d828c4432 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM06-Larvae)' for execution May-05 14:12:15.583 [Task submitter] INFO nextflow.processor.TaskProcessor - [bc/87fa6c] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM06-Larvae)' for execution -- Execution is retried (2) May-05 14:12:16.860 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ff/ead6bdff7f4690b29c7c5eb0fa17f2 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM01-Zygote)' for execution May-05 14:12:16.861 [Task submitter] INFO nextflow.processor.TaskProcessor - [ff/ead6bd] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM01-Zygote)' for execution -- Execution is retried (2) May-05 14:12:18.273 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM03-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/36/2f4f685ea08f38f4e94a010f0d8cfa error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM03-Larvae)' for execution May-05 14:12:18.276 [Task submitter] INFO nextflow.processor.TaskProcessor - [36/2f4f68] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM03-Larvae)' for execution -- Execution is retried (2) May-05 14:12:19.694 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM03-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/52/90ec0600772d1148a449db301d91ca error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM03-Larvae)' for execution May-05 14:12:19.694 [Task submitter] INFO nextflow.processor.TaskProcessor - [52/90ec06] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM03-Larvae)' for execution -- Execution is retried (2) May-05 14:12:20.357 [Task submitter] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM04-Larvae); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/84/641ba2b8fed00985ff8e9aee9c9857 error [nextflow.exception.ProcessFailedException]: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM04-Larvae)' for execution May-05 14:12:20.358 [Task submitter] INFO nextflow.processor.TaskProcessor - [84/641ba2] NOTE: Error submitting process 'NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM04-Larvae)' for execution -- Execution is retried (2) May-05 14:12:21.035 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM01-Zygote) > jobId: 25786744; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/e9/b3a24d6d180fe811a53142763cd733 May-05 14:12:21.035 [Task submitter] INFO nextflow.Session - [e9/b3a24d] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM01-Zygote) May-05 14:12:21.861 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF02-CM02-Zygote) > jobId: 25786745; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/30/4762edfdd67b3211f089f61f930a89 May-05 14:12:21.862 [Task submitter] INFO nextflow.Session - [30/4762ed] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF02-CM02-Zygote) May-05 14:12:22.850 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM03-Zygote) > jobId: 25786746; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/5f/706e3753ecb9a5e12b7378ccd6ba7c May-05 14:12:22.851 [Task submitter] INFO nextflow.Session - [5f/706e37] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM03-Zygote) May-05 14:12:23.383 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM02-Larvae) > jobId: 25786747; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/cb/eb2a2f34977940f4cff66bb599c473 May-05 14:12:23.384 [Task submitter] INFO nextflow.Session - [cb/eb2a2f] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM02-Larvae) May-05 14:12:24.267 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM04-Larvae) > jobId: 25786748; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ed/2449a0773357ca0c5e56c06277226b May-05 14:12:24.267 [Task submitter] INFO nextflow.Session - [ed/2449a0] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM04-Larvae) May-05 14:12:26.260 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM05-Larvae) > jobId: 25786749; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/21/1fbe4936d17c7ff8dea3346915a412 May-05 14:12:26.260 [Task submitter] INFO nextflow.Session - [21/1fbe49] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM05-Larvae) May-05 14:12:27.565 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF04-CM04-Zygote) > jobId: 25786750; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/71/15db8f17b338f166e487a2095a1453 May-05 14:12:27.565 [Task submitter] INFO nextflow.Session - [71/15db8f] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF04-CM04-Zygote) May-05 14:12:28.825 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM02-Larvae) > jobId: 25786752; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/75/f395725cbb556abd19a7d910975fc3 May-05 14:12:28.839 [Task submitter] INFO nextflow.Session - [75/f39572] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM02-Larvae) May-05 14:12:30.224 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM01-Zygote) > jobId: 25786753; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9c/caf5446311faa0b5b9915b0a764448 May-05 14:12:30.224 [Task submitter] INFO nextflow.Session - [9c/caf544] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM01-Zygote) May-05 14:12:31.529 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM05-Zygote) > jobId: 25786754; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/79/b3efa36d8deb7dc1d35b9860c98bc6 May-05 14:12:31.529 [Task submitter] INFO nextflow.Session - [79/b3efa3] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM05-Zygote) May-05 14:12:32.983 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF07-CM02-Zygote) > jobId: 25786759; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/8d/5557a502ce4d499e421fa798f54e37 May-05 14:12:32.983 [Task submitter] INFO nextflow.Session - [8d/5557a5] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF07-CM02-Zygote) May-05 14:12:34.335 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM02-Larvae) > jobId: 25786760; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/cd/24aa9c0f1e586ee338bd6f079cb39d May-05 14:12:34.335 [Task submitter] INFO nextflow.Session - [cd/24aa9c] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM02-Larvae) May-05 14:12:35.690 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM03-Zygote) > jobId: 25786765; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/64/2292fb30d6468b5f8c31b8b1170350 May-05 14:12:35.691 [Task submitter] INFO nextflow.Session - [64/2292fb] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM03-Zygote) May-05 14:12:37.296 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM04-Larvae) > jobId: 25786770; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/7d/62784bd994492e2683d8469b7bd87f May-05 14:12:37.296 [Task submitter] INFO nextflow.Session - [7d/62784b] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM04-Larvae) May-05 14:12:38.644 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF01-EM01-Zygote) > jobId: 25786775; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/80/7e5fada022df9981c124730e75b04e May-05 14:12:38.644 [Task submitter] INFO nextflow.Session - [80/7e5fad] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF01-EM01-Zygote) May-05 14:12:40.084 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM05-Larvae) > jobId: 25786780; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/61/939a8a85926c86fff8800ff84c5d1c May-05 14:12:40.084 [Task submitter] INFO nextflow.Session - [61/939a8a] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF08-CM05-Larvae) May-05 14:12:40.371 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF02-EM02-Zygote) > jobId: 25786781; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/91/a0009a236fb30872ee471ad2fb26f3 May-05 14:12:40.384 [Task submitter] INFO nextflow.Session - [91/a0009a] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF02-EM02-Zygote) May-05 14:12:41.767 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM03-Zygote) > jobId: 25786786; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/af/555ecf3d7f5e69340e02c4f874d2b9 May-05 14:12:41.768 [Task submitter] INFO nextflow.Session - [af/555ecf] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM03-Zygote) May-05 14:12:43.104 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM04-Larvae) > jobId: 25786791; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/13/239a771673aeb3915eb182b48ea47f May-05 14:12:43.104 [Task submitter] INFO nextflow.Session - [13/239a77] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM04-Larvae) May-05 14:12:44.441 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM05-Larvae) > jobId: 25786796; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/01/e35c09a7277e2e9ad837a1d80c3693 May-05 14:12:44.441 [Task submitter] INFO nextflow.Session - [01/e35c09] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF03-EM05-Larvae) May-05 14:12:45.778 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM04-Zygote) > jobId: 25786799; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/1c/47005c266f4b29cb07d29a6e615538 May-05 14:12:45.778 [Task submitter] INFO nextflow.Session - [1c/47005c] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM04-Zygote) May-05 14:12:45.842 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786352; id: 70; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF02-CM02-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/91/821613effe0804972ba8b7f192752d started: 1746478710763; exited: 2025-05-05T21:12:41.194657315Z; ] May-05 14:12:47.163 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM05-Larvae) > jobId: 25786807; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/70/b648684f2326dd0562d34a8fff728e May-05 14:12:47.163 [Task submitter] INFO nextflow.Session - [70/b64868] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF04-EM05-Larvae) May-05 14:12:48.587 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM01-Larvae) > jobId: 25786812; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/46/880efde1410f792fc9c3070f545127 May-05 14:12:48.587 [Task submitter] INFO nextflow.Session - [46/880efd] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM01-Larvae) May-05 14:12:49.928 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM05-Zygote) > jobId: 25786817; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/66/2e6f33db5c0f98d83192433c2fd5fc May-05 14:12:49.929 [Task submitter] INFO nextflow.Session - [66/2e6f33] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM05-Zygote) May-05 14:12:51.439 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM06-Larvae) > jobId: 25786822; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/33/6ef06c4aae3e14b83fd25cbcebe08e May-05 14:12:51.464 [Task submitter] INFO nextflow.Session - [33/6ef06c] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF05-EM06-Larvae) May-05 14:12:51.773 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM01-Larvae) > jobId: 25786823; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/91/c386a7406fc25fcf5c7cf10b6566f1 May-05 14:12:51.773 [Task submitter] INFO nextflow.Session - [91/c386a7] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM01-Larvae) May-05 14:12:52.344 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM02-Larvae) > jobId: 25786824; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/b5/74f07c3346217328d246ae54594371 May-05 14:12:52.344 [Task submitter] INFO nextflow.Session - [b5/74f07c] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM02-Larvae) May-05 14:12:54.048 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM06-Larvae) > jobId: 25786829; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/c1/3d5cf7f3fb4cf1de88dfd89450499e May-05 14:12:54.048 [Task submitter] INFO nextflow.Session - [c1/3d5cf7] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF06-EM06-Larvae) May-05 14:12:55.695 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM01-Zygote) > jobId: 25786833; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/07/1919b801792bcfa4aa845e4b63c6eb May-05 14:12:55.696 [Task submitter] INFO nextflow.Session - [07/1919b8] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM01-Zygote) May-05 14:12:56.950 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM03-Larvae) > jobId: 25786835; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/4e/5902833d9793fd28303266a583a662 May-05 14:12:56.950 [Task submitter] INFO nextflow.Session - [4e/590283] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF07-EM03-Larvae) May-05 14:12:57.906 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM03-Larvae) > jobId: 25786840; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/36/b41d0fed7a26fb6c82b60fb73cb23c May-05 14:12:57.907 [Task submitter] INFO nextflow.Session - [36/b41d0f] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM03-Larvae) May-05 14:12:58.183 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM04-Larvae) > jobId: 25786841; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/c7/e0e63e8f12b74611631bb002411a5e May-05 14:12:58.183 [Task submitter] INFO nextflow.Session - [c7/e0e63e] Re-submitted process > NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (EF08-EM04-Larvae) May-05 14:13:40.834 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786368; id: 79; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (CF07-CM02-Zygote); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/22/17f4aba45f1e6e81c89a5fae308285 started: 1746478720789; exited: 2025-05-05T21:13:36.392860425Z; ] May-05 14:14:25.838 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786380; id: 91; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF05-EM06-Larvae); status: COMPLETED; exit: 0; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/6c/33386f26ce5064701ba5668c0923cc started: 1746478740770; exited: 2025-05-05T21:14:21.487933301Z; ] May-05 14:16:50.831 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 33 -- submitted tasks are shown below ~> TaskHandler[jobId: 25786393; id: 96; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/8a/09314e6973586447ae303df719dd7f started: 1746478745780; exited: -; ] ~> TaskHandler[jobId: 25786744; id: 164; name: NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM01-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/e9/b3a24d6d180fe811a53142763cd733 started: 1746479545829; exited: -; ] ~> TaskHandler[jobId: 25786745; id: 165; name: NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF02-CM02-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/30/4762edfdd67b3211f089f61f930a89 started: 1746479545835; exited: -; ] ~> TaskHandler[jobId: 25786746; id: 166; name: NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM03-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/5f/706e3753ecb9a5e12b7378ccd6ba7c started: 1746479550830; exited: -; ] ~> TaskHandler[jobId: 25786747; id: 167; name: NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF01-CM02-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/cb/eb2a2f34977940f4cff66bb599c473 started: 1746479550867; exited: -; ] ~> TaskHandler[jobId: 25786748; id: 168; name: NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM04-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/ed/2449a0773357ca0c5e56c06277226b started: 1746479550889; exited: -; ] ~> TaskHandler[jobId: 25786749; id: 169; name: NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF03-CM05-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/21/1fbe4936d17c7ff8dea3346915a412 started: 1746479557957; exited: -; ] ~> TaskHandler[jobId: 25786750; id: 170; name: NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF04-CM04-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/71/15db8f17b338f166e487a2095a1453 started: 1746479557962; exited: -; ] ~> TaskHandler[jobId: 25786752; id: 171; name: NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF05-CM02-Larvae); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/75/f395725cbb556abd19a7d910975fc3 started: 1746479557969; exited: -; ] ~> TaskHandler[jobId: 25786753; id: 172; name: NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_ALIGN (CF06-CM01-Zygote); status: RUNNING; exit: -; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/9c/caf5446311faa0b5b9915b0a764448 started: 1746479557976; exited: -; ] .. remaining tasks omitted. May-05 14:18:30.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25786393; id: 96; name: NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote); status: COMPLETED; exit: 1; error: -; workDir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/8a/09314e6973586447ae303df719dd7f started: 1746478745780; exited: 2025-05-05T21:18:27.859121072Z; ] May-05 14:18:30.869 [TaskFinalizer-3] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote); work-dir=/mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/8a/09314e6973586447ae303df719dd7f error [nextflow.exception.ProcessFailedException]: Process `NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote)` terminated with an error exit status (1) May-05 14:18:32.008 [TaskFinalizer-3] ERROR nextflow.processor.TaskProcessor - Error executing process > 'NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote)' Caused by: Process `NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote)` terminated with an error exit status (1) Command executed: printf "%s %s\n" EF07-EM01-Zygote_R1_001.fastp-trim.20220827.fq.gz EF07-EM01-Zygote_1.gz EF07-EM01-Zygote_R2_001.fastp-trim.20220827.fq.gz EF07-EM01-Zygote_2.gz | while read old_name new_name; do [ -f "${new_name}" ] || ln -s $old_name $new_name done fastqc \ --quiet \ --threads 16 \ --memory 6912 \ EF07-EM01-Zygote_1.gz EF07-EM01-Zygote_2.gz cat <<-END_VERSIONS > versions.yml "NFCORE_METHYLSEQ:METHYLSEQ:FASTQC": fastqc: $( fastqc --version | sed '/FastQC v/!d; s/.*v//' ) END_VERSIONS Command exit status: 1 Command output: application/gzip application/gzip Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred Failed to process file EF07-EM01-Zygote_2.gz uk.ac.babraham.FastQC.Sequence.SequenceFormatException: Ran out of data in the middle of a fastq entry. Your file is probably truncated at uk.ac.babraham.FastQC.Sequence.FastQFile.readNext(FastQFile.java:187) at uk.ac.babraham.FastQC.Sequence.FastQFile.next(FastQFile.java:129) at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:77) at java.base/java.lang.Thread.run(Thread.java:833) Work dir: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/8a/09314e6973586447ae303df719dd7f Container: /gscratch/scrubbed/srlab/.apptainer/depot.galaxyproject.org-singularity-fastqc-0.12.1--hdfd78af_0.img Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run` May-05 14:18:32.429 [TaskFinalizer-3] DEBUG nextflow.Session - Session aborted -- Cause: Process `NFCORE_METHYLSEQ:METHYLSEQ:FASTQC (EF07-EM01-Zygote)` terminated with an error exit status (1) May-05 14:18:32.447 [TaskFinalizer-3] DEBUG nextflow.Session - The following nodes are still active: [process] NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_SORT_ALIGNED status=ACTIVE port 0: (queue) OPEN ; channel: - port 1: (value) bound ; channel: - port 2: (cntrl) - ; channel: $ [process] NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_DEDUPLICATE status=ACTIVE port 0: (queue) OPEN ; channel: - port 1: (cntrl) - ; channel: $ [process] NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_METHYLATIONEXTRACTOR status=ACTIVE port 0: (queue) OPEN ; channel: - port 1: (value) bound ; channel: - port 2: (cntrl) - ; channel: $ [process] NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_COVERAGE2CYTOSINE status=ACTIVE port 0: (queue) OPEN ; channel: - port 1: (value) bound ; channel: - port 2: (value) bound ; channel: - port 3: (cntrl) - ; channel: $ [process] NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_REPORT status=ACTIVE port 0: (queue) OPEN ; channel: - port 1: (cntrl) - ; channel: $ [process] NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:BISMARK_SUMMARY status=ACTIVE port 0: (value) OPEN ; channel: bam port 1: (value) OPEN ; channel: align_report port 2: (value) OPEN ; channel: dedup_report port 3: (value) OPEN ; channel: splitting_report port 4: (value) OPEN ; channel: mbias port 5: (cntrl) - ; channel: $ [process] NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_SORT_DEDUPLICATED status=ACTIVE port 0: (queue) OPEN ; channel: - port 1: (value) bound ; channel: - port 2: (cntrl) - ; channel: $ [process] NFCORE_METHYLSEQ:METHYLSEQ:BISMARK:SAMTOOLS_INDEX_DEDUPLICATED status=ACTIVE port 0: (queue) OPEN ; channel: - port 1: (cntrl) - ; channel: $ [process] NFCORE_METHYLSEQ:METHYLSEQ:QUALIMAP_BAMQC status=ACTIVE port 0: (queue) OPEN ; channel: - port 1: (value) bound ; channel: gff port 2: (cntrl) - ; channel: $ [process] NFCORE_METHYLSEQ:METHYLSEQ:PRESEQ_LCEXTRAP status=ACTIVE port 0: (queue) OPEN ; channel: - port 1: (cntrl) - ; channel: $ [process] NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC status=ACTIVE port 0: (value) OPEN ; channel: multiqc_files port 1: (value) bound ; channel: multiqc_config port 2: (value) bound ; channel: extra_multiqc_config port 3: (value) bound ; channel: multiqc_logo port 4: (value) bound ; channel: replace_names port 5: (value) bound ; channel: sample_names port 6: (cntrl) - ; channel: $ May-05 14:18:32.473 [TaskFinalizer-3] DEBUG nextflow.Session - Thread[process reaper,10,system] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:252) java.base@17.0.14-internal/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:401) java.base@17.0.14-internal/java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:903) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1061) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[PublishDir-7,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[JGit-FileStoreAttributeReader-1,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[AnsiLogObserver,5,main] java.base@17.0.14-internal/java.lang.ProcessImpl.forkAndExec(Native Method) java.base@17.0.14-internal/java.lang.ProcessImpl.(ProcessImpl.java:314) java.base@17.0.14-internal/java.lang.ProcessImpl.start(ProcessImpl.java:244) java.base@17.0.14-internal/java.lang.ProcessBuilder.start(ProcessBuilder.java:1110) java.base@17.0.14-internal/java.lang.ProcessBuilder.start(ProcessBuilder.java:1073) java.base@17.0.14-internal/java.lang.Runtime.exec(Runtime.java:594) java.base@17.0.14-internal/java.lang.Runtime.exec(Runtime.java:453) app//jline.internal.TerminalLineSettings.exec(TerminalLineSettings.java:183) app//jline.internal.TerminalLineSettings.exec(TerminalLineSettings.java:173) app//jline.internal.TerminalLineSettings.stty(TerminalLineSettings.java:168) app//jline.internal.TerminalLineSettings.get(TerminalLineSettings.java:72) app//jline.internal.TerminalLineSettings.getProperty(TerminalLineSettings.java:92) app//jline.UnixTerminal.getWidth(UnixTerminal.java:77) app//nextflow.trace.AnsiLogObserver.renderProcesses(AnsiLogObserver.groovy:257) app//nextflow.trace.AnsiLogObserver.renderProgress(AnsiLogObserver.groovy:312) app//nextflow.trace.AnsiLogObserver.render0(AnsiLogObserver.groovy:183) java.base@17.0.14-internal/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) java.base@17.0.14-internal/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) java.base@17.0.14-internal/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) java.base@17.0.14-internal/java.lang.reflect.Method.invoke(Method.java:569) app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017) app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) app//groovy.lang.Closure.call(Closure.java:433) app//groovy.lang.Closure.call(Closure.java:412) app//groovy.lang.Closure.run(Closure.java:505) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[pool-2-thread-1,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[TaskFinalizer-5,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[PublishDir-6,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[TaskFinalizer-1,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[PublishDir-1,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[Actor Thread 31,5,main] java.base@17.0.14-internal/sun.nio.ch.FileDispatcherImpl.write0(Native Method) java.base@17.0.14-internal/sun.nio.ch.FileDispatcherImpl.write(FileDispatcherImpl.java:62) java.base@17.0.14-internal/sun.nio.ch.IOUtil.writeFromNativeBuffer(IOUtil.java:132) java.base@17.0.14-internal/sun.nio.ch.IOUtil.write(IOUtil.java:97) java.base@17.0.14-internal/sun.nio.ch.IOUtil.write(IOUtil.java:67) java.base@17.0.14-internal/sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:288) java.base@17.0.14-internal/java.nio.channels.Channels.writeFullyImpl(Channels.java:74) java.base@17.0.14-internal/java.nio.channels.Channels.writeFully(Channels.java:96) java.base@17.0.14-internal/java.nio.channels.Channels$1.write(Channels.java:171) java.base@17.0.14-internal/sun.nio.cs.StreamEncoder.writeBytes(StreamEncoder.java:234) java.base@17.0.14-internal/sun.nio.cs.StreamEncoder.implFlushBuffer(StreamEncoder.java:313) java.base@17.0.14-internal/sun.nio.cs.StreamEncoder.implFlush(StreamEncoder.java:318) java.base@17.0.14-internal/sun.nio.cs.StreamEncoder.flush(StreamEncoder.java:160) java.base@17.0.14-internal/java.io.OutputStreamWriter.flush(OutputStreamWriter.java:248) java.base@17.0.14-internal/java.io.BufferedWriter.flush(BufferedWriter.java:257) java.base@17.0.14-internal/java.io.PrintWriter.flush(PrintWriter.java:396) app//nextflow.trace.TraceFileObserver$_onProcessComplete_closure3.doCall(TraceFileObserver.groovy:270) jdk.internal.reflect.GeneratedMethodAccessor232.invoke(Unknown Source) java.base@17.0.14-internal/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) java.base@17.0.14-internal/java.lang.reflect.Method.invoke(Method.java:569) app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) app//org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:279) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) app//groovy.lang.Closure.call(Closure.java:433) app//groovy.lang.Closure.call(Closure.java:422) app//groovyx.gpars.agent.AgentBase.onMessage(AgentBase.java:102) app//groovyx.gpars.agent.Agent.handleMessage(Agent.java:84) app//groovyx.gpars.agent.AgentCore$1.handleMessage(AgentCore.java:48) app//groovyx.gpars.util.AsyncMessagingCore.run(AsyncMessagingCore.java:132) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[PublishDir-5,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[Actor Thread 30,5,main] java.base@17.0.14-internal/java.lang.Thread.yield(Native Method) app//groovyx.gpars.actor.AbstractLoopingActor.terminate(AbstractLoopingActor.java:208) app//groovyx.gpars.dataflow.operator.DataflowProcessor.terminate(DataflowProcessor.java:147) app//groovyx.gpars.dataflow.operator.DataflowProcessorActor.checkPoison(DataflowProcessorActor.java:115) app//groovyx.gpars.dataflow.operator.DataflowOperatorActor.onMessage(DataflowOperatorActor.java:83) app//groovyx.gpars.actor.impl.SDAClosure$1.call(SDAClosure.java:43) app//groovyx.gpars.actor.AbstractLoopingActor.runEnhancedWithoutRepliesOnMessages(AbstractLoopingActor.java:293) app//groovyx.gpars.actor.AbstractLoopingActor.access$400(AbstractLoopingActor.java:30) app//groovyx.gpars.actor.AbstractLoopingActor$1.handleMessage(AbstractLoopingActor.java:93) app//groovyx.gpars.util.AsyncMessagingCore.run(AsyncMessagingCore.java:132) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[Reference Handler,10,system] java.base@17.0.14-internal/java.lang.ref.Reference.waitForReferencePendingList(Native Method) java.base@17.0.14-internal/java.lang.ref.Reference.processPendingReferences(Reference.java:253) java.base@17.0.14-internal/java.lang.ref.Reference$ReferenceHandler.run(Reference.java:215) Thread[TaskFinalizer-6,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[main,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) app//nextflow.util.Barrier$_awaitCompletion_closure3.doCall(Barrier.groovy:92) app//nextflow.util.Barrier$_awaitCompletion_closure3.call(Barrier.groovy) app//nextflow.extension.Bolts.withLock(Bolts.groovy:337) app//nextflow.extension.Bolts.withLock(Bolts.groovy) app//nextflow.util.Barrier.awaitCompletion(Barrier.groovy:89) app//nextflow.Session.await(Session.groovy:676) app//nextflow.script.ScriptRunner.await(ScriptRunner.groovy:256) app//nextflow.script.ScriptRunner.execute(ScriptRunner.groovy:144) app//nextflow.cli.CmdRun.run(CmdRun.groovy:376) app//nextflow.cli.Launcher.run(Launcher.groovy:503) app//nextflow.cli.Launcher.main(Launcher.groovy:658) Thread[Actor Thread 24,5,main] java.base@17.0.14-internal/java.lang.invoke.MethodHandleImpl.valueConversion(MethodHandleImpl.java:390) java.base@17.0.14-internal/java.lang.invoke.MethodHandleImpl.computeValueConversions(MethodHandleImpl.java:372) java.base@17.0.14-internal/java.lang.invoke.MethodHandleImpl.makePairwiseConvertByEditor(MethodHandleImpl.java:280) java.base@17.0.14-internal/java.lang.invoke.MethodHandleImpl.makePairwiseConvert(MethodHandleImpl.java:262) java.base@17.0.14-internal/java.lang.invoke.MethodHandleImpl.makePairwiseConvert(MethodHandleImpl.java:379) java.base@17.0.14-internal/java.lang.invoke.MethodHandles.explicitCastArguments(MethodHandles.java:4781) app//org.codehaus.groovy.vmplugin.v8.Selector$MethodSelector.setCallSiteTarget(Selector.java:1033) app//org.codehaus.groovy.vmplugin.v8.Selector$CastSelector.handleBoolean(Selector.java:277) app//org.codehaus.groovy.vmplugin.v8.Selector$CastSelector.setCallSiteTarget(Selector.java:178) app//org.codehaus.groovy.vmplugin.v8.IndyInterface.fallback(IndyInterface.java:360) app//org.codehaus.groovy.vmplugin.v8.IndyInterface.access$000(IndyInterface.java:50) app//org.codehaus.groovy.vmplugin.v8.IndyInterface$FallbackSupplier.get(IndyInterface.java:282) app//org.codehaus.groovy.vmplugin.v8.IndyInterface.lambda$fromCache$1(IndyInterface.java:304) app//org.codehaus.groovy.vmplugin.v8.IndyInterface$$Lambda$95/0x00001531820ae650.provide(Unknown Source) app//org.codehaus.groovy.vmplugin.v8.CacheableCallSite.getAndPut(CacheableCallSite.java:70) app//org.codehaus.groovy.vmplugin.v8.IndyInterface.lambda$fromCache$2(IndyInterface.java:301) app//org.codehaus.groovy.vmplugin.v8.IndyInterface$$Lambda$94/0x00001531820ae218.apply(Unknown Source) app//org.codehaus.groovy.vmplugin.v8.IndyInterface.doWithCallSite(IndyInterface.java:376) app//org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:298) java.base@17.0.14-internal/java.lang.invoke.LambdaForm$DMH/0x00001531820a6c00.invokeStatic(LambdaForm$DMH) java.base@17.0.14-internal/java.lang.invoke.LambdaForm$MH/0x0000153182171800.invoke(LambdaForm$MH) java.base@17.0.14-internal/java.lang.invoke.LambdaForm$MH/0x0000153182171c00.linkToCallSite(LambdaForm$MH) app//nextflow.extension.DataflowHelper$_subscribeImpl_closure2.doCall(DataflowHelper.groovy:286) jdk.internal.reflect.GeneratedMethodAccessor109.invoke(Unknown Source) java.base@17.0.14-internal/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) java.base@17.0.14-internal/java.lang.reflect.Method.invoke(Method.java:569) app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) app//org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:279) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) app//groovy.lang.Closure.call(Closure.java:433) app//groovyx.gpars.dataflow.operator.DataflowOperatorActor.startTask(DataflowOperatorActor.java:120) app//groovyx.gpars.dataflow.operator.DataflowOperatorActor.onMessage(DataflowOperatorActor.java:108) app//groovyx.gpars.actor.impl.SDAClosure$1.call(SDAClosure.java:43) app//groovyx.gpars.actor.AbstractLoopingActor.runEnhancedWithoutRepliesOnMessages(AbstractLoopingActor.java:293) app//groovyx.gpars.actor.AbstractLoopingActor.access$400(AbstractLoopingActor.java:30) app//groovyx.gpars.actor.AbstractLoopingActor$1.handleMessage(AbstractLoopingActor.java:93) app//groovyx.gpars.util.AsyncMessagingCore.run(AsyncMessagingCore.java:132) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[TaskFinalizer-7,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[TaskFinalizer-10,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[PublishDir-4,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[PublishDir-9,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[Signal Dispatcher,9,system] Thread[TaskFinalizer-2,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[TaskFinalizer-3,5,main] java.base@17.0.14-internal/java.lang.Thread.dumpThreads(Native Method) java.base@17.0.14-internal/java.lang.Thread.getAllStackTraces(Thread.java:1671) app//nextflow.util.SysHelper.dumpThreads(SysHelper.groovy:188) app//nextflow.Session.abort(Session.groovy:800) app//nextflow.Session.fault(Session.groovy:766) app//nextflow.processor.TaskPollingMonitor.finalizeTask(TaskPollingMonitor.groovy:695) app//nextflow.processor.TaskPollingMonitor.safeFinalizeTask(TaskPollingMonitor.groovy:678) jdk.internal.reflect.GeneratedMethodAccessor252.invoke(Unknown Source) java.base@17.0.14-internal/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) java.base@17.0.14-internal/java.lang.reflect.Method.invoke(Method.java:569) app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) app//org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645) app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628) app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82) app//nextflow.processor.TaskPollingMonitor$_checkTaskStatus_lambda8.doCall(TaskPollingMonitor.groovy:668) app//nextflow.processor.TaskPollingMonitor$$Lambda$669/0x000015318279d398.run(Unknown Source) java.base@17.0.14-internal/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539) java.base@17.0.14-internal/java.util.concurrent.FutureTask.run(FutureTask.java:264) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[Finalizer,8,system] java.base@17.0.14-internal/java.lang.Object.wait(Native Method) java.base@17.0.14-internal/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155) java.base@17.0.14-internal/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:176) java.base@17.0.14-internal/java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:172) Thread[PublishDir-2,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[PublishDir-10,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[PublishDir-8,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[pool-2-thread-2,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[Task monitor,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:252) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1764) app//nextflow.processor.TaskPollingMonitor$_await_closure5.doCall(TaskPollingMonitor.groovy:529) app//nextflow.processor.TaskPollingMonitor$_await_closure5.call(TaskPollingMonitor.groovy) app//nextflow.extension.Bolts.withLock(Bolts.groovy:337) app//nextflow.extension.Bolts.withLock(Bolts.groovy) app//nextflow.processor.TaskPollingMonitor.await(TaskPollingMonitor.groovy:528) app//nextflow.processor.TaskPollingMonitor.pollLoop(TaskPollingMonitor.groovy:453) java.base@17.0.14-internal/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) java.base@17.0.14-internal/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) java.base@17.0.14-internal/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) java.base@17.0.14-internal/java.lang.reflect.Method.invoke(Method.java:569) app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) app//org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645) app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628) app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82) app//nextflow.processor.TaskPollingMonitor$_start_closure2.doCall(TaskPollingMonitor.groovy:318) app//nextflow.processor.TaskPollingMonitor$_start_closure2.call(TaskPollingMonitor.groovy) app//groovy.lang.Closure.run(Closure.java:505) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[Notification Thread,9,system] Thread[Thread-4,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:252) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:1679) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingDeque.pollFirst(LinkedBlockingDeque.java:515) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingDeque.poll(LinkedBlockingDeque.java:677) app//nextflow.util.SimpleAgent.run(SimpleAgent.groovy:89) java.base@17.0.14-internal/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) java.base@17.0.14-internal/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) java.base@17.0.14-internal/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) java.base@17.0.14-internal/java.lang.reflect.Method.invoke(Method.java:569) app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017) app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) app//groovy.lang.Closure.call(Closure.java:433) app//groovy.lang.Closure.call(Closure.java:412) app//groovy.lang.Closure.run(Closure.java:505) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[PublishDir-3,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[TaskFinalizer-4,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[TaskFinalizer-8,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[TaskFinalizer-9,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) java.base@17.0.14-internal/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:435) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1062) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1122) java.base@17.0.14-internal/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) Thread[Common-Cleaner,8,InnocuousThreadGroup] java.base@17.0.14-internal/java.lang.Object.wait(Native Method) java.base@17.0.14-internal/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155) java.base@17.0.14-internal/jdk.internal.ref.CleanerImpl.run(CleanerImpl.java:140) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) java.base@17.0.14-internal/jdk.internal.misc.InnocuousThread.run(InnocuousThread.java:162) Thread[Task submitter,5,main] java.base@17.0.14-internal/jdk.internal.misc.Unsafe.park(Native Method) java.base@17.0.14-internal/java.util.concurrent.locks.LockSupport.park(LockSupport.java:341) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionNode.block(AbstractQueuedSynchronizer.java:506) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.unmanagedBlock(ForkJoinPool.java:3465) java.base@17.0.14-internal/java.util.concurrent.ForkJoinPool.managedBlock(ForkJoinPool.java:3436) java.base@17.0.14-internal/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1630) app//nextflow.processor.TaskPollingMonitor.awaitTasks(TaskPollingMonitor.groovy:388) app//nextflow.processor.TaskPollingMonitor.submitLoop(TaskPollingMonitor.groovy:412) java.base@17.0.14-internal/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) java.base@17.0.14-internal/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) java.base@17.0.14-internal/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) java.base@17.0.14-internal/java.lang.reflect.Method.invoke(Method.java:569) app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017) app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) app//groovy.lang.Closure.call(Closure.java:433) app//groovy.lang.Closure.call(Closure.java:412) app//groovy.lang.Closure.run(Closure.java:505) java.base@17.0.14-internal/java.lang.Thread.run(Thread.java:840) May-05 14:18:32.476 [TaskFinalizer-3] ERROR nextflow.Nextflow - Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting May-05 14:18:32.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: slurm) - terminating tasks monitor poll loop May-05 14:18:32.561 [main] DEBUG nextflow.Session - Session await > all processes finished May-05 14:18:32.562 [main] DEBUG nextflow.Session - Session await > all barriers passed May-05 14:18:32.568 [main] INFO nextflow.Nextflow - -[nf-core/methylseq] Pipeline completed with errors- May-05 14:18:32.570 [main] WARN n.processor.TaskPollingMonitor - Killing running tasks (32) May-05 14:18:32.651 [Actor Thread 37] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 3; slices: 1; internal sort time: 0.001 s; external sort time: 0.001 s; total time: 0.002 s May-05 14:18:32.686 [Actor Thread 37] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /mmfs1/gscratch/scrubbed/strigg/analyses/20250502_methylseq/work/collect-file/b2725d752b0512d3185b2f8174e36164 May-05 14:18:32.688 [Actor Thread 37] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-6679373664231547103 May-05 14:18:32.767 [Actor Thread 34] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for task: name=NFCORE_METHYLSEQ:METHYLSEQ:MULTIQC; work-dir=null error [java.lang.InterruptedException]: java.lang.InterruptedException May-05 14:18:32.770 [Actor Thread 44] DEBUG nextflow.container.SingularityCache - Singularity found local store for image=https://depot.galaxyproject.org/singularity/multiqc:1.25.1--pyhdfd78af_0; path=/gscratch/scrubbed/srlab/.apptainer/depot.galaxyproject.org-singularity-multiqc-1.25.1--pyhdfd78af_0.img May-05 14:18:33.711 [Actor Thread 43] DEBUG nextflow.util.HashBuilder - Hash asset file sha-256: /mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq/assets/multiqc_config.yml May-05 14:18:35.522 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=32; failedCount=131; ignoredCount=0; cachedCount=0; pendingCount=131; submittedCount=7; runningCount=-137; retriesCount=130; abortedCount=32; succeedDuration=3d 9h 39m 57s; failedDuration=5h 10m 41s; cachedDuration=0ms;loadCpus=-1612; loadMemory=0; peakRunning=0; peakCpus=0; peakMemory=0; ] May-05 14:18:35.523 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow completed -- saving trace file May-05 14:18:35.544 [main] DEBUG nextflow.trace.ReportObserver - Workflow completed -- rendering execution report May-05 14:18:36.130 [main] DEBUG nextflow.trace.TimelineObserver - Workflow completed -- rendering execution timeline May-05 14:18:36.556 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done May-05 14:18:36.579 [main] INFO org.pf4j.AbstractPluginManager - Stop plugin 'nf-schema@2.1.1' May-05 14:18:36.579 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-schema May-05 14:18:36.580 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye