R version 4.3.3 (2024-02-29) Platform: x86_64-conda-linux-gnu (64-bit) Running under: Debian GNU/Linux 12 (bookworm) Matrix products: default BLAS/LAPACK: /usr/local/lib/libopenblasp-r0.3.27.so; LAPACK version 3.12.0 locale: [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C time zone: NA tzcode source: system (glibc) attached base packages: [1] stats4 stats graphics grDevices utils datasets methods [8] base other attached packages: [1] DT_0.33 plotly_4.10.4 [3] ggplot2_3.5.1 shinyngs_1.8.8 [5] SummarizedExperiment_1.32.0 Biobase_2.62.0 [7] GenomicRanges_1.54.1 GenomeInfoDb_1.38.1 [9] IRanges_2.36.0 S4Vectors_0.40.2 [11] BiocGenerics_0.48.1 MatrixGenerics_1.14.0 [13] matrixStats_1.3.0 yaml_2.3.8 [15] knitr_1.46 loaded via a namespace (and not attached): [1] tidyselect_1.2.1 viridisLite_0.4.2 dplyr_1.1.4 [4] farver_2.1.1 bitops_1.0-7 fastmap_1.1.1 [7] lazyeval_0.2.2 RCurl_1.98-1.14 promises_1.3.0 [10] digest_0.6.35 mime_0.12 lifecycle_1.0.4 [13] magrittr_2.0.3 compiler_4.3.3 rlang_1.1.3 [16] sass_0.4.9 tools_4.3.3 utf8_1.2.4 [19] data.table_1.15.2 S4Arrays_1.2.0 labeling_0.4.3 [22] htmlwidgets_1.6.4 scatterplot3d_0.3-44 DelayedArray_0.28.0 [25] plyr_1.8.9 RColorBrewer_1.1-3 abind_1.4-5 [28] withr_3.0.0 purrr_1.0.2 grid_4.3.3 [31] fansi_1.0.6 xtable_1.8-4 colorspace_2.1-0 [34] scales_1.3.0 MASS_7.3-60 cli_3.6.2 [37] rmarkdown_2.26 crayon_1.5.2 generics_0.1.3 [40] httr_1.4.7 reshape2_1.4.4 commonmark_1.9.1 [43] cachem_1.0.8 stringr_1.5.1 zlibbioc_1.48.0 [46] XVector_0.42.0 base64enc_0.1-3 vctrs_0.6.5 [49] Matrix_1.6-5 jsonlite_1.8.8 crosstalk_1.2.1 [52] tidyr_1.3.1 jquerylib_0.1.4 ggdendro_0.2.0 [55] d3heatmap_0.6.1.2 glue_1.7.0 stringi_1.8.3 [58] gtable_0.3.5 later_1.3.2 munsell_0.5.1 [61] tibble_3.2.1 pillar_1.9.0 htmltools_0.5.8.1 [64] GenomeInfoDbData_1.2.11 R6_2.5.1 evaluate_0.23 [67] shiny_1.8.1.1 lattice_0.22-6 markdown_1.12 [70] highr_0.10 png_0.1-8 httpuv_1.6.15 [73] bslib_0.7.0 Rcpp_1.0.12 SparseArray_1.2.2 [76] xfun_0.43 pkgconfig_2.0.3