R version 4.1.3 (2022-03-10) Platform: x86_64-conda-linux-gnu (64-bit) Running under: Debian GNU/Linux 10 (buster) Matrix products: default BLAS/LAPACK: /usr/local/lib/libopenblasp-r0.3.21.so locale: [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8 [4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 [7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats4 stats graphics grDevices utils datasets methods [8] base other attached packages: [1] BiocParallel_1.28.3 DESeq2_1.34.0 [3] SummarizedExperiment_1.24.0 Biobase_2.54.0 [5] MatrixGenerics_1.6.0 matrixStats_0.62.0 [7] GenomicRanges_1.46.1 GenomeInfoDb_1.30.0 [9] IRanges_2.28.0 S4Vectors_0.32.4 [11] BiocGenerics_0.40.0 loaded via a namespace (and not attached): [1] Rcpp_1.0.9 locfit_1.5-9.6 invgamma_1.1 [4] lattice_0.20-45 png_0.1-7 Biostrings_2.62.0 [7] utf8_1.2.2 truncnorm_1.0-8 R6_2.5.1 [10] RSQLite_2.2.8 httr_1.4.4 ggplot2_3.3.6 [13] pillar_1.8.1 zlibbioc_1.40.0 rlang_1.0.6 [16] annotate_1.72.0 irlba_2.3.5 blob_1.2.3 [19] Matrix_1.4-1 splines_4.1.3 geneplotter_1.72.0 [22] RCurl_1.98-1.9 bit_4.0.4 munsell_0.5.0 [25] mixsqp_0.3-43 DelayedArray_0.20.0 compiler_4.1.3 [28] pkgconfig_2.0.3 SQUAREM_2021.1 KEGGREST_1.34.0 [31] tibble_3.1.8 GenomeInfoDbData_1.2.7 XML_3.99-0.11 [34] fansi_1.0.3 crayon_1.5.2 bitops_1.0-7 [37] grid_4.1.3 xtable_1.8-4 gtable_0.3.1 [40] lifecycle_1.0.3 DBI_1.1.3 magrittr_2.0.3 [43] scales_1.2.1 cli_3.4.1 cachem_1.0.6 [46] XVector_0.34.0 genefilter_1.76.0 vctrs_0.4.2 [49] RColorBrewer_1.1-3 tools_4.1.3 bit64_4.0.5 [52] glue_1.6.2 parallel_4.1.3 fastmap_1.1.0 [55] survival_3.4-0 AnnotationDbi_1.56.1 colorspace_2.0-3 [58] ashr_2.2-54 memoise_2.0.1