FastQCFastQC Report
Fri 26 Sep 2025
SRX18040063_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040063_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80926065
Total Bases12.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT1472340.1819364379078607Illumina Single End PCR Primer 1 (100% over 50bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG1130040.13963857009481434Illumina Single End PCR Primer 1 (100% over 50bp)
GTTGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTAT811650.1002952509800149No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)