FastQCFastQC Report
Fri 26 Sep 2025
SRX18040063_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040063_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80926065
Total Bases12.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT1478170.18265684856912295No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCC1464540.18097259517066597TruSeq Adapter, Index 1 (100% over 50bp)
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG1456350.17996056029661148No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA1406800.173837687523791No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC1324200.16363084007606202No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC1115380.13782704002721496TruSeq Adapter, Index 1 (100% over 50bp)
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC1112710.1374971092440983No Hit
CCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAAG1047420.1294292512554515No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTCA1034410.12782161099764333No Hit
CCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTG952440.1176926123863801No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT948410.11719462697216279No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA935400.11558698671435463No Hit
CCTACCTAACCATATCCTTAGCAATATTAAGGCTGCACTTAAAGGCATTT834160.1030768022638936No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)