FastQCFastQC Report
Fri 26 Sep 2025
SRX18040062_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040062_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70135556
Total Bases10.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTTAAGTAGCGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTAT1556470.22192309988959097No Hit
GAAGTTGTTAAGTAGCGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAG1036220.14774531765314586No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT869680.12399987247552441Illumina Single End PCR Primer 1 (100% over 50bp)
ATTTGATACAGTAAATTCTCGAACTAATTTCTTTAAGGATGTGATACGCA811840.11575298554701698No Hit
GGAGTATTAGAAAGCCCATAATCTAGCTATATTAAGTCTGACTAGACGCA793700.11316656561473613No Hit
CATTATTGAAGCTTGTTTATACAGTACCTTTAGCAGAATGGCCTTTTGAG718890.10250007856214899No Hit
CAGTACCTTTAGCAGAATGGCCTTTTGAGAGAATTTACCTTATGGTTTTT713360.10171160545159148No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)