FastQCFastQC Report
Fri 26 Sep 2025
SRX18040060_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040060_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24307348
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT461800.18998370369322065Illumina Single End PCR Primer 1 (100% over 50bp)
CGCAAAATCGGGCTTTATGATAGCTGGTTGTTCAAAAAATGCTTTTAAGT326330.13425158515852903No Hit
CCTGACTTCAGTCGATCATAGGAGAAGTTACGCCGGGGATAACAGGCCAA296880.12213590721620474No Hit
GGAGAAGTTACGCCGGGGATAACAGGCCAATCCTCTAGTAAAGTTCGTAT281150.11566461302154395No Hit
CAAAAACATCACTGAGAGTATTTGATTCTCAGCAGTACCTGCCCAGTGCG279470.1149734639912178No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)