FastQCFastQC Report
Fri 26 Sep 2025
SRX18040058_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040058_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34557127
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATCGGGCTTTATGATAGCTGGTTGTTCAAAAAATGCTTTTAAGT594340.17198767710058768No Hit
CCTTAATATTGCTAAGGATATGGTTAGGTAGGATTCTGTTTGTCCGCAGC530100.15339816877716714No Hit
GGAGAAGTTACGCCGGGGATAACAGGCCAATCCTCTAGTAAAGTTCGTAT477710.13823776496234771No Hit
CCTGACTTCAGTCGATCATAGGAGAAGTTACGCCGGGGATAACAGGCCAA469280.1357983260587606No Hit
GCTGGTTGTTCAAAAAATGCTTTTAAGTGCAGCCTTAATATTGCTAAGGA376700.1090079045054874No Hit
ATTCAACTTTATCTAAAGGAACTCGGCAAATACTAAGCCTCGCCTGTTTA376230.10887189782877495No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)