FastQCFastQC Report
Fri 26 Sep 2025
SRX18040058_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040058_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34557127
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA1115310.3227438438386385No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC1084750.3139005160932505No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC1079710.31244206151744036No Hit
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA860930.24913240038733545No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA686710.19871732971320213No Hit
CTTCTTAGTAATTGTAGGAAAATCTTTCCTATCTTAACGGTCCTTTCGTA659230.19076527976414243No Hit
CCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAAG609150.17627333429656927No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT588110.170184865194378No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT568220.16442917838627036No Hit
CCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACTAGCACTAGCC523990.15163008197990532No Hit
TGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAA478430.13844611561603487No Hit
GGCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTC466860.13509803636164547No Hit
GCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCA462770.13391448889833926No Hit
GCTTCTTAGTAATTGTAGGAAAATCTTTCCTATCTTAACGGTCCTTTCGT455190.13172101951646617No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTTA441360.12771895071022543No Hit
CCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACTAGCACTAGCCT438860.12699551094047834No Hit
CCCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAA435020.12588430745414686No Hit
CTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAACCT405100.11722618028981403No Hit
CCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTT403160.11666479102849031No Hit
CACCATATAGCTATCTTTAGTTGATTGAACAATTTTACTGAGCTCTATTA386430.11182353208934297No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)