FastQCFastQC Report
Fri 26 Sep 2025
SRX18040056_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040056_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41450664
Total Bases6.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA944250.22780093462435244No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC745810.17992715388105723No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC649490.15668989042009074No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA564110.13609190916700392No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA506730.12224894636187253No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)