FastQCFastQC Report
Fri 26 Sep 2025
SRX18040055_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040055_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28771268
Total Bases4.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT1707970.5936373746197073No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTCA1267660.4405992811995634No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC1038150.36082872677005406No Hit
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT1015060.35280335924019757No Hit
CCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTC887780.3085647806693817No Hit
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG885430.3077479935886037No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA850570.2956317392754466No Hit
CCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGTT810600.28173940752281057No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC732530.25460469799245555No Hit
CCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAAG606810.210908327015688No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA512370.1780839134375308No Hit
GCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCA510890.17756951136112595No Hit
CCTACCTAACCATATCCTTAGCAATATTAAGGCTGCACTTAAAGGCATTT504990.17551885443491752No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT504460.17533464288052927No Hit
CCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTG487670.16949895986509875No Hit
GGCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTC461940.1605560102530066No Hit
CCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGTTG427290.14851274542366363No Hit
CTGCGGACAAACAGAATCCTACCTAACCATATCCTTAGCAATATTAAGGC420200.14604848142250804No Hit
CCCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAA395650.13751566319565756No Hit
CCCCAAACTCGCTCCAAGTTATGGTCCGTGTTTATGTTGATAAATTGGTG368710.12815215512920738No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA364720.1267653549367376No Hit
CCTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAG361140.12552105802219074No Hit
CTTCTTAGTAATTGTAGGAAAATCTTTCCTATCTTAACGGTCCTTTCGTA353570.12288996091517412No Hit
CCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTCAG322980.11225782610623904No Hit
TGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAA318760.11079108505054418No Hit
GGCCATTCTGCTAAAGGTACTGTATAAACAAGCTTCAATAATGATAATGC296060.10290126941919975No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)