FastQCFastQC Report
Fri 26 Sep 2025
SRX18040052_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040052_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34057385
Total Bases5.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA990610.2908649621807429No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC599120.17591485664562911No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC520630.1528684601005039No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA437160.12835982562959547No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT409130.12012959891077954No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA395680.1161803820228711No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)