FastQCFastQC Report
Fri 26 Sep 2025
SRX18040050_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040050_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60542350
Total Bases9.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTTAAGTAGCGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTAT1139050.18814102855274037No Hit
ATTTGATACAGTAAATTCTCGAACTAATTTCTTTAAGGATGTGATACGCA1066870.1762187956034082No Hit
GAAGTTGTTAAGTAGCGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAG1055730.17437876131336164No Hit
AGAAGTTGTTAAGTAGCGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGA902440.1490592948572363No Hit
CGCAAAATCGGGCTTTATGATAGCTGGTTGTTCAAAAAATGCTTTTAAGT895040.14783700996079605No Hit
GGAGTATTAGAAAGCCCATAATCTAGCTATATTAAGTCTGACTAGACGCA687650.11358164986988446No Hit
CCTTAATATTGCTAAGGATATGGTTAGGTAGGATTCTGTTTGTCCGCAGC609280.1006369921220435No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)