FastQCFastQC Report
Fri 26 Sep 2025
SRX18040049_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040049_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57765157
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG902510.15623778188640602No Hit
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA882480.1527702936910567No Hit
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT639690.11073976653434874No Hit
GGCCATTCTGCTAAAGGTACTGTATAAACAAGCTTCAATAATGATAATGC621350.10756484224564646No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC599950.10386018685970161No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)