FastQCFastQC Report
Fri 26 Sep 2025
SRX18040047_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040047_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42017590
Total Bases6.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTACCTTTAGCAGAATGGCCTTTTGAGAGAATTTACCTTATGGTTTTT794200.18901607636230444No Hit
GTTGTTAAGTAGCGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTAT692880.16490236589009508No Hit
ATTTGATACAGTAAATTCTCGAACTAATTTCTTTAAGGATGTGATACGCA679720.161770344277242No Hit
CATTATTGAAGCTTGTTTATACAGTACCTTTAGCAGAATGGCCTTTTGAG631380.15026563874796245No Hit
CGCAAAATCGGGCTTTATGATAGCTGGTTGTTCAAAAAATGCTTTTAAGT626790.14917323911247646No Hit
GGAGTATTAGAAAGCCCATAATCTAGCTATATTAAGTCTGACTAGACGCA605110.14401349530042062No Hit
GAAGTTGTTAAGTAGCGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAG546930.13016691342839987No Hit
AGTACCTTTAGCAGAATGGCCTTTTGAGAGAATTTACCTTATGGTTTTTC535280.12739426511610968No Hit
GAGATTTTTAAAGACGTAATGCCGAGGTATTTGATACAGTAAATTCTCGA519010.12352207730143495No Hit
ATTTACCTTATGGTTTTTCCCGAAATAAAGAGATTTTTAAAGACGTAATG499020.11876454599133364No Hit
GTAAATTCTCGAACTAATTTCTTTAAGGATGTGATACGCAAAATCGGGCT422670.10059358473439338No Hit
GGCCTTTTGAGAGAATTTACCTTATGGTTTTTCCCGAAATAAAGAGATTT422280.10050076646471157No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)