FastQCFastQC Report
Fri 26 Sep 2025
SRX18040047_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040047_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42017590
Total Bases6.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT1333750.3174265825336484No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA1050340.24997625994256215No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC953040.22681929163476536No Hit
CCTACCTAACCATATCCTTAGCAATATTAAGGCTGCACTTAAAAGCATTT824970.19633919984463652No Hit
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA737270.1754669889443921No Hit
CCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTG730880.17394619729499003No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT670010.15945940735772804No Hit
CCTAACCATATCCTTAGCAATATTAAGGCTGCACTTAAAAGCATTTTTTG666580.15864308257565463No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT660320.15715323034947984No Hit
CTTTATTTCGGGAAAAACCATAAGGTAAATTCTCTCAAAAGGCCATTCTG653440.15551582087406726No Hit
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG623780.14845687246698347No Hit
CGAGAATTTACTGTATCAAATACCTCGGCATTACGTCTTTAAAAATCTCT522320.12430984261591395No Hit
GCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTGTATCAAATA518790.12346971827751187No Hit
CACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTAGC512790.12204174489779161No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC499280.11882642483778817No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTTA476330.11336442666035819No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA437740.10418017787312409No Hit
CAGCTATCATAAAGCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGT435860.10373274621414508No Hit
CTCTTTATTTCGGGAAAAACCATAAGGTAAATTCTCTCAAAAGGCCATTC432310.10288786196447726No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA429110.1021262761619598No Hit
CCTTAAAGAAATTAGTTCGAGAATTTACTGTATCAAATACCTCGGCATTA427320.10170026410367657No Hit
CTGCGGACAAACAGAATCCTACCTAACCATATCCTTAGCAATATTAAGGC426730.10155984672133743No Hit
CTTAGCAATATTAAGGCTGCACTTAAAAGCATTTTTTGAACAACCAGCTA420830.10015567289794584No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)