FastQCFastQC Report
Fri 26 Sep 2025
SRX18040046_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040046_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58024592
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT1372720.23657555403405506No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC1100980.18974368660791271No Hit
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG982810.16937818365013235No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTTA959820.16541607048266707No Hit
CCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTG852310.14688771960688668No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT842890.14526427001847766No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT756470.13037058494095055No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA681910.1175208608101889No Hit
CCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTT654470.11279183143588498No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA651570.11229204334603507No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC629690.10852122837847787No Hit
CCCGTACCCATAACCTCCAAAATGGCTGATGCCACCATACCCTTTCGGAT616460.10624116064443848No Hit
CCCCCGTACCCATAACCTCCAAAATGGCTGATGCCACCATACCCTTTCGG598410.10313041063692442No Hit
GGCCATTCTGCTAAAGGTACTGTATAAACAAGCTTCAATAATGATAATGC582690.10042121450849668No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)