FastQCFastQC Report
Fri 26 Sep 2025
SRX18040045_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040045_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45586738
Total Bases6.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT2387780.5237883000095335No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT1776400.3896747339105509No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTTA1728630.3791958090969352No Hit
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG1475840.3237432781437444No Hit
CCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTG1286650.2822421731513231No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC1083530.23768535489422385No Hit
GGCCATTCTGCTAAAGGTACTGTATAAACAAGCTTCAATAATGATAATGC1067890.23425453253531764No Hit
CCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTT941860.20660833420456626No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA936660.20546765157884295No Hit
CCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGTT887450.1946728454227192No Hit
CCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAAG772340.16942208060598676No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT696540.15279443771563564No Hit
GCCGGGATGAAAACGCGACAACTGGATCACAAACTCGCCTAGAGTAGAAC593890.13027692395977095No Hit
CCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGTTG565870.12413039950346964No Hit
GTCCGTGTTTATATTGATAAATTGGTGAGCGCCACTACAGCATAAAAGAA559870.12281422724301967No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA534090.11715907376395301No Hit
CTGCGGACAAACAGAATCCTACCTAACCATATCCTTAGCAATATTAAGGC534030.11714591204134851No Hit
GCCGTTATTACCATTTCCGCCATCGCCGTTATCACCGTTTCCACCGTTTC531710.1166369921006412No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC517050.11342114454427513No Hit
CCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTTAG502220.11016800544052965No Hit
CCTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAG465830.10218542068090065No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)