FastQCFastQC Report
Fri 26 Sep 2025
SRX18040044_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040044_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35951817
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC1183650.3292323166865252No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA836990.23280881742360893No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC683360.19007662394365213No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT650520.18094217602409357No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA617720.1718188541068731No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT580570.1614855794353871No Hit
CCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAAG492530.13699724828928675No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCC434490.1208534188967417TruSeq Adapter, Index 10 (100% over 50bp)
TGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAA426480.11862543692854244No Hit
CTTCTTAGTAATTGTAGGAAAATCTTTCCTATCTTAACGGTCCTTTCGTA400710.11145750992223842No Hit
CTCCGGCTTTCTGTGCGGCCTTGGTCACTTTGCCTTGTGATGGATCGGCC379670.10560523269241162No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)