FastQCFastQC Report
Fri 26 Sep 2025
SRX18040038_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040038_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36960663
Total Bases5.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTTAAGTAGCGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTAT931360.2519868217731917No Hit
GAAGTTGTTAAGTAGCGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAG628130.16994554453744512No Hit
GGAGTATTAGAAAGCCCATAATCTAGCTATATTAAGTCTGACTAGACGCA594070.16073034187725474No Hit
ATTTGATACAGTAAATTCTCGAACTAATTTCTTTAAGGATGTGATACGCA571860.15472125053600905No Hit
CATTATTGAAGCTTGTTTATACAGTACCTTTAGCAGAATGGCCTTTTGAG559760.15144749973776173No Hit
CGCAAAATCGGGCTTTATGATAGCTGGTTGTTCAAAAAATGCTTTTAAGT545930.1477056837427402No Hit
CAGTACCTTTAGCAGAATGGCCTTTTGAGAGAATTTACCTTATGGTTTTT513510.1389341960667751No Hit
AGAAGTTGTTAAGTAGCGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGA488500.13216754255733995No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT411820.11142116146563713Illumina Single End PCR Primer 1 (100% over 50bp)
ATTTACCTTATGGTTTTTCCCGAAATAAAGAGATTTTTAAAGACGTAATG378390.1023764102932894No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)