FastQCFastQC Report
Fri 26 Sep 2025
SRX18040037_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040037_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47983731
Total Bases7.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT1411510.2941642866412368No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA1048400.2184907213655395No Hit
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG1005780.20960854419594843No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTTA991970.20673048538055536No Hit
CCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTG935320.19492440052233537No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC891760.18584632362164583No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT807060.16819450742586065No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC773590.16121922657494056No Hit
CCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTT703600.14663303276687675No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA637080.13277000073212314No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT622080.1296439411933182No Hit
CTTCTTAGTAATTGTAGGAAAATCTTTCCTATCTTAACGGTCCTTTCGTA621640.1295522434468466No Hit
CTGCGGACAAACAGAATCCTACCTAACCATATCCTTAGCAATATTAAGGC575130.11985937483685878No Hit
GGCCATTCTGCTAAAGGTACTGTATAAACAAGCTTCAATAATGATAATGC518160.10798660070847763No Hit
CCTACCTAACCATATCCTTAGCAATATTAAGGCTGCACTTAAAAGCATTT518010.10795534011308959No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA494940.1031474605424076No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)