FastQCFastQC Report
Fri 26 Sep 2025
SRX18040036_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040036_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47736236
Total Bases7.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTAT906020.18979711764454993No Hit
GGAGAAGTTACGCCGGGGATAACAGGCCAATCCTCTAGTAAAGTTCGTAT770520.16141197223844794No Hit
ATTTGATACAGTAAATTCTCGAACTAATTTCTTTAAGGATGTGATACGCA695820.1457634824832021No Hit
GAAGTTGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAG684300.14335022141251355No Hit
GTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTATTAG643880.13488285921830953No Hit
GCAAAATCGGGCTTTATGATAGCTGGTTGTTCAAAAAATGCCTTTAAGTG634610.13294093820048988No Hit
GGAGTATTAGAAAGCCCATAATCTAGCTATATTAAGTCTGACTAGACGCA628740.13171126437367203No Hit
AGAAGTTGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGA570210.11945013846504363No Hit
AGTACCTTTAGCAGAATGGCCTTTTGAGAGAATTTACCTTATGGTTTTTC562430.11782034930445709No Hit
ATTCAACTTTATCTAAAGGAACTCGGCAAATACTAAGCCTCGCCTGTTTA491780.10302027164437513No Hit
TGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTATTA489040.10244628420221485No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)