FastQCFastQC Report
Fri 26 Sep 2025
SRX18040036_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040036_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47736236
Total Bases7.2 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA1289300.27008832451724935No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA1284800.2691456444115116No Hit
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT1252930.2624693744182093No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC1178820.246944480499049No Hit
GGCCATTCTGCTAAAGGTACTGTATAAACAAGCTTCAATAATGATAATGC1107800.2320668935858286No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC1001060.20970652147773028No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT806930.1690393017162057No Hit
GCCAGACTTCTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACC805380.16871460079089604No Hit
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG733730.15370503866287238No Hit
GCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCA710510.14884080931726582No Hit
CCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTACT710220.14878005882156273No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA657330.13770042531212556No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA651360.13644980303851356No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT577380.12095214210018569No Hit
GGACAAACAGAATCCTACCTAACCATATCCTTAGCAATATTAAGGCTGCA503250.10542305849166658No Hit
GGGTATTAAAGGTCGAACAGACCTACTTATTAAAGCTTCTACGCCTTAAA494750.10364244051416203No Hit
GTAGGGTATTAAAGGTCGAACAGACCTACTTATTAAAGCTTCTACGCCTT483130.10120823099667935No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)