FastQCFastQC Report
Fri 26 Sep 2025
SRX18040032_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040032_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49134270
Total Bases7.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGAAAAGCTAAGCTGAATTAATAAGTAAAAGATTTTTGGGTGGGGCG672930.13695736193902952No Hit
ATTTGATACAGTAAATTCTCGAACTAATTTCTTTAAGGATGTGATACGCA614970.12516111463546725No Hit
CGCAAAATCGGGCTTTATGATAGCTGGTTGTTCAAAAAATGCCTTTAAGT578370.11771213859491551No Hit
CCTTAATATTGCTAAGGATATGGTTAGGTAGGATTCTGTTTGTCCGCAGC567030.11540417716595769No Hit
GCAAAATCGGGCTTTATGATAGCTGGTTGTTCAAAAAATGCCTTTAAGTG540470.10999858143816933No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)