FastQCFastQC Report
Fri 26 Sep 2025
SRX18040032_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040032_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49134270
Total Bases7.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC2831070.5761905081728089No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT2433890.49535487145733514No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA2182760.44424390552663146No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTCA2156820.4389644946388742No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT1881710.38297302473406036No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC1712250.3484838586184348No Hit
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT1401160.28516959751310034No Hit
CCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAAG1385350.2819518840923046No Hit
CCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTC1326740.2700233462306451No Hit
GCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCA1269850.25844486953810447No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA1254740.2553696228721827No Hit
CCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGTT1082780.2203716469177216No Hit
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG1056600.21504339028543623No Hit
CTTCTTAGTAATTGTAGGAAAATCTTTCCTATCTTAACGGTCCTTTCGTA993700.202241734740335No Hit
GGCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTC950190.19338640830524195No Hit
TGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAA943930.19211234846879785No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA931300.1895418411630009No Hit
CCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTACT823940.16769151144404915No Hit
GGCCATTCTGCTAAAGGTACTGTATAAACAAGCTTCAATAATGATAATGC775090.15774936719320345No Hit
GCTTCTTAGTAATTGTAGGAAAATCTTTCCTATCTTAACGGTCCTTTCGT687930.14001022097204252No Hit
CCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTG687020.1398250141907064No Hit
CCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGTTG683790.13916763187893094No Hit
CCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTCAG655170.1333427768439421No Hit
CTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAACCT643380.13094322964399388No Hit
CCCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAA626590.12752606276637468No Hit
CCTACCTAACCATATCCTTAGCAATATTAAGGCTGCACTTAAAGGCATTT575150.1170567915224954No Hit
CTGCGGACAAACAGAATCCTACCTAACCATATCCTTAGCAATATTAAGGC494360.10061409277068734No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)