FastQCFastQC Report
Fri 26 Sep 2025
SRX18040028_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040028_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30231347
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC1535440.5078966544229736No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA1093080.36157171561029017No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT1001860.3313977375867506No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA852640.28203837559735595No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC766990.25370685599950277No Hit
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA712380.23564282464820374No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT626930.20737746154678455No Hit
CCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAAG622420.20588563255219822No Hit
GCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCA519850.1719572733560301No Hit
TGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAA449060.14854118144322184No Hit
GGCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTC429790.1421670030118076No Hit
GCTTCTTAGTAATTGTAGGAAAATCTTTCCTATCTTAACGGTCCTTTCGT424750.14049985930167122No Hit
CCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACTAGCACTAGCCT411910.13625261223060953No Hit
CACCATATAGCTATCTTTAGTTGATTGAACAATTTTACTGAGCTCTATTA401340.1327562413940735No Hit
CTTCTTAGTAATTGTAGGAAAATCTTTCCTATCTTAACGGTCCTTTCGTA390710.1292400236086073No Hit
CCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTACT375820.1243146724490973No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCC366380.1211920858174133TruSeq Adapter, Index 10 (100% over 50bp)
GTAGGGTATTAAAGGTCGAACAGACCTACTTATTAAAGCTTCTACGCCTT347110.11481790738599905No Hit
CTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAACCT335210.11088159584817706No Hit
CCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACTAGCACTAGCC334950.11079559240281288No Hit
GCTCTATTAAACAAATTATTATTTTCAAAAGCTGAAAGACAAGTTACTAA316260.10461326781105718No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)