FastQCFastQC Report
Fri 26 Sep 2025
SRX18040027_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040027_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27590343
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT909410.3296117050810133No Hit
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG626090.2269236014934646No Hit
CCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTG584210.2117443773714593No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTTA417890.15146241567203425No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT375920.1362505714408842No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC345870.12535907944312255No Hit
CCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTT343150.12437322725563796No Hit
CTCCGCTTTGTCGAGCTCGGTTTCCGAGATCTTTTTGTTTCCGTCAGTAT340730.12349610876530241No Hit
GGCCATTCTGCTAAAGGTACTGTATAAACAAGCTTCAATAATGATAATGC328530.11907427174790831No Hit
CTGCGGACAAACAGAATCCTACCTAACCATATCCTTAGCAATATTAAGGC308770.11191234556235855No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC307710.11152815316576528No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)