FastQCFastQC Report
Fri 26 Sep 2025
SRX18040026_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040026_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40185031
Total Bases6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC1184420.29474159171359104No Hit
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA1098090.2732584678110613No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA792090.19711071020450374No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC640050.1592757263270495No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA633940.15775525966372902No Hit
CCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAAG506990.12616389421225033No Hit
CCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTACT459320.11430126805177779No Hit
GCCAGACTTCTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACC435330.10833138339497611No Hit
GCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCA413520.10290398929890088No Hit
CTCGTCAAACCATTCATGCAGGCCCACAATCAAAAGGCAAGGAATTTCGC406570.10117448957548396No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA406030.10104011117970768No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT403110.10031347244699151No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)