FastQCFastQC Report
Fri 26 Sep 2025
SRX18040025_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040025_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63273315
Total Bases9.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTGATACAGTAAATTCTCGAACTAATTTCTTTAAGGATGTGATACGCA1048670.16573653522025833No Hit
GGAGAAGTTACGCCGGGGATAACAGGCCAATCCTCTAGTAAAGTTCGTAT926290.1463950482126628No Hit
CGCAAAATCGGGCTTTATGATAGCTGGTTGTTCAAAAAATGCCTTTAAGT899990.14223847762678468No Hit
ATTCAACTTTATCTAAAGGAACTCGGCAAATACTAAGCCTCGCCTGTTTA800720.12654939922145694No Hit
GAAGTTGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAG773320.12221897967571321No Hit
GTTGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTAT728830.11518757947169356No Hit
AGAAGTTGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGA669820.10586137299744766No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)