FastQCFastQC Report
Fri 26 Sep 2025
SRX18040025_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040025_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63273315
Total Bases9.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC2081950.3290407654474876No Hit
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA1976290.3123417826298496No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA1512740.23908025049738582No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA1415340.22368671532382967No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC1204730.19040096128992134No Hit
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT1145940.18110952460764856No Hit
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG1140570.1802608255944864No Hit
GCCAGACTTCTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACC840660.1328616969096688No Hit
CCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTACT839540.1326846870596238No Hit
CCACAATCAAAAGGCAAGGAATTTCGCTACCTTAGCACCCTCACGCTAAG838800.13256773412298692No Hit
GCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCA763040.12059428212351447No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT761940.12042043316364884No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA751160.11871671335696574No Hit
GGCCATTCTGCTAAAGGTACTGTATAAACAAGCTTCAATAATGATAATGC747230.11809559843671855No Hit
CTCGTCAAACCATTCATGCAGGCCCACAATCAAAAGGCAAGGAATTTCGC723540.11435152401924886No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTCA714820.11297337590104137No Hit
CTTCTTAGTAATTGTAGGAAAATCTTTCCTATCTTAACGGTCCTTTCGTA696950.11014912052576982No Hit
CACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTAGC674880.10666107821282952No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)