FastQCFastQC Report
Fri 26 Sep 2025
SRX18040024_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040024_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66411518
Total Bases10 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG1753500.26403552468112534No Hit
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT1604390.24158309406509876No Hit
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA1574350.2370597823106528No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA1020520.15366611556748333No Hit
CCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTG1005730.15143909223698213No Hit
GGCCATTCTGCTAAAGGTACTGTATAAACAAGCTTCAATAATGATAATGC988750.14888230683117348No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC800540.12054234327244259No Hit
CAGCTATCATAAAGCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGT681490.10261623593666389No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)