FastQCFastQC Report
Fri 26 Sep 2025
SRX18040023_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040023_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65232798
Total Bases9.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGGCATTACGTCTTTAAAAATCTCTTTATTTCGGGAAAAACCATAAGG1131290.17342349779324198No Hit
CTAGCACTAGCCTGACCTTTAGCCAGACTTCTCACTCTTAATGCTGCGGA986780.15127053112147665No Hit
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT915810.14039103458355412No Hit
CTCACTCTTAATGCTGCGGACAAACAGAATCCTACCTAACCATATCCTTA668600.10249445378688188No Hit
CCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACTG663270.10167738014242467No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)