FastQCFastQC Report
Fri 26 Sep 2025
SRX18040017_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040017_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50703140
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCGTATCCACTGCTGTATCCACCACCGTACCCACCAATGTATCCACC2756640.5436823044884399No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC1933020.381242660710954No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT1208570.23836196338136062No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA1092290.21542847247724697No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA1051770.20743685696783276No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC1036790.20448240483725466No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC1029490.20304265179631872TruSeq Adapter, Index 7 (100% over 50bp)
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTTA873940.17236407843774568No Hit
TGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAA821210.16196432804753316No Hit
CACGTCTTCCGTATCCACTGCTGTATCCACCACCGTACCCACCAATGTAT816030.1609426950678005No Hit
CCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTT805870.15893887439712806No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT770720.1520063648917996No Hit
CCACGTCTTCCGTATCCACTGCTGTATCCACCACCGTACCCACCAATGTA737690.14549197544767445No Hit
TCCGTATCCACTGCTGTATCCACCACCGTACCCACCAATGTATCCACCAC729790.1439338865403602No Hit
CCCCCGTACCCATAACCTCCAAAATGGCTGATGCCACCATACCCTTTCGG623350.12294110384485064No Hit
GCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCA560340.11051386561068997No Hit
GGCCTGTTATCCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTC526400.10382000010255776No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)