FastQCFastQC Report
Fri 26 Sep 2025
SRX18040014_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040014_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46042099
Total Bases6.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT1145350.2487614650235646No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTTA1034070.22459228020859778No Hit
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC974750.21170841928818235No Hit
CCCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTT801620.17410587645015924No Hit
GTCCTTTCGTACATATTAAGATAATATTATTTAAAGCAGATAGAAACCAA726550.1578012331714069No Hit
CCCTGATTCAACATCGAGGTGCCAAGCCCTTTAGTTAATACGAACTTTAC670970.14572967231576475No Hit
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT561980.12205785839607355No Hit
CCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGTT545060.11838296077683165No Hit
GTGGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAA498550.10828133617453019No Hit
CCCCAGTCAAACTCCCCGCCTGACACTGTCTTCAGAGCGGATCGCCCCCG461080.10014313204964873No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)