FastQCFastQC Report
Fri 26 Sep 2025
SRX18040007_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040007_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53729614
Total Bases8.1 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAAC936550.17430797101948287No Hit
GCCCGATTTTGCGTATCACATCCTTAAAGAAATTAGTTCGAGAATTTACT720020.13400803512193482No Hit
CCCGGCGTAACTTCTCCTATGATCGACTGAAGTCAGGTCAAATCTAGTTA666740.12409171597622123No Hit
GCACTATAAACCCTATTTCTCTTTCTAAAAATTGAAATATTAAAGAAACT633610.11792565641733439No Hit
GCCCCACCCAAAAATCTTTTACTTATTAATTCAGCTTAGCTTTTCAAAGT619390.11527907123993111No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)