FastQCFastQC Report
Fri 26 Sep 2025
SRX18040004_2.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRX18040004_2.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37692802
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATCGGGCTTTATGATAGCTGGTTGTTCAAAAAATGCCTTTAAGT559820.14852172571304195No Hit
GTTGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTAT534470.14179630370806606No Hit
GAAGTTGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAG440850.11695867025221421No Hit
ATTTGATACAGTAAATTCTCGAACTAATTTCTTTAAGGATGTGATACGCA414100.10986182454676624No Hit
TGTTAAGTAACGGTTCTTAAACTTTTAGGTGGTTGAGTATAGGAGTATTA400820.10633860544514574No Hit
ATTCAACTTTATCTAAAGGAACTCGGCAAATACTAAGCCTCGCCTGTTTA393250.10433026443616476No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)