Nextflow workflow report

[crazy_jepsen] (resumed run)

Run times

06-Aug-2025 04:47:08 - 06-Aug-2025 04:49:03 (duration: 1m 54s)

  3 succeeded  

  8 cached  

  0 ignored  

  0 failed (0 retries)  

Nextflow command

nextflow run nf-core/differentialabundance -c /gscratch/srlab/strigg/bin/uw_hyak_srlab.config -resume --study_name dataset_2 --input study2_samplesheet.csv --contrasts study2_contrasts.csv --outdir /gscratch/scrubbed/strigg/analyses/20250804_diffabund --matrix salmon.merged.gene_counts_length_scaled_dataset2.tsv --feature_type gene --features_gtf_feature_type gene --filtering_min_abundance 10 --filtering_min_proportion 0.75 --gtf /gscratch/srlab/strigg/GENOMES/GCF_002022765.2_C_virginica-3.0_genomic_noEmptyGeneIDs.gtf

CPU-Hours

0.1 (72% cached)

Launch directory

/mmfs1/gscratch/scrubbed/strigg/analyses/20250804_diffabund

Work directory

/mmfs1/gscratch/scrubbed/strigg/analyses/20250804_diffabund/work

Project directory

/mmfs1/gscratch/srlab/nextflow/bin/assets/nf-core/differentialabundance

Script name

main.nf

Script ID

245bb78a7f289adc8d5fe330165781c1

Workflow session

b06ad2c0-6caa-4c7f-858a-79ff1af69184

Workflow repository

https://github.com/nf-core/differentialabundance, revision master (commit hash 3dd360fed0dca1780db1bdf5dce85e5258fa2253)

Workflow profile

standard

Workflow container

[RMARKDOWNNOTEBOOK:biocontainers/r-shinyngs:1.8.8--r43hdfd78af_0]

Container engine

singularity

Nextflow version

version 25.04.6, build 5954 (01-07-2025 11:27 UTC)