Nextflow workflow report

[drunk_bardeen]

Run times

02-Jul-2025 14:14:19 - 02-Jul-2025 14:25:15 (duration: 10m 56s)

  11 succeeded  

  0 cached  

  0 ignored  

  0 failed  

Nextflow command

nextflow run nf-core/differentialabundance -c /gscratch/srlab/strigg/bin/uw_hyak_srlab.config -resume --study_name dataset_1 --input study1_samplesheet.csv --contrasts study1_contrasts.csv --outdir /gscratch/scrubbed/strigg/analyses/20250702_diffabund --matrix /gscratch/scrubbed/strigg/analyses/20250701_diffabund/salmon.merged.gene_counts_length_scaled_dataset1.tsv --feature_type gene --features_gtf_feature_type gene --filtering_min_abundance 10 --filtering_min_proportion 0.75 --gtf /gscratch/srlab/strigg/GENOMES/GCF_002022765.2_C_virginica-3.0_genomic_noEmptyGeneIDs.gtf

CPU-Hours

0.2

Launch directory

/mmfs1/gscratch/scrubbed/strigg/analyses/20250702_diffabund

Work directory

/mmfs1/gscratch/scrubbed/strigg/analyses/20250702_diffabund/work

Project directory

/mmfs1/home/strigg/.nextflow/assets/nf-core/differentialabundance

Script name

main.nf

Script ID

245bb78a7f289adc8d5fe330165781c1

Workflow session

3067f67a-cfd0-4a44-b457-36c3ceeae213

Workflow repository

https://github.com/nf-core/differentialabundance, revision master (commit hash 3dd360fed0dca1780db1bdf5dce85e5258fa2253)

Workflow profile

standard

Workflow container

[RMARKDOWNNOTEBOOK:biocontainers/r-shinyngs:1.8.8--r43hdfd78af_0]

Container engine

singularity

Nextflow version

version 24.10.6, build 5937 (23-04-2025 16:53 UTC)