Nextflow workflow report

[sleepy_minsky] (resumed run)

Error executing process > 'NFCORE_DIFFERENTIALABUNDANCE:DIFFERENTIALABUNDANCE:SHINYNGS_APP (1)'

Caused by:
  Process `NFCORE_DIFFERENTIALABUNDANCE:DIFFERENTIALABUNDANCE:SHINYNGS_APP` input file name collision -- There are multiple input files for each of the following file names: breed_dose.deseq2.results.tsv



Container:
  /gscratch/scrubbed/srlab/.apptainer/depot.galaxyproject.org-singularity-r-shinyngs-1.8.8--r43hdfd78af_0.img

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`

Run times

01-Jul-2025 12:23:15 - 01-Jul-2025 12:39:22 (duration: 16m 7s)

  9 succeeded  

  1 cached  

  0 ignored  

  0 failed  

Nextflow command

nextflow run nf-core/differentialabundance -c /gscratch/srlab/strigg/bin/uw_hyak_srlab.config -resume --study_name dataset_1 --input study1_samplesheet.csv --contrasts study1_contrasts.csv --outdir /gscratch/scrubbed/strigg/analyses/20250701_diffabund --matrix /gscratch/scrubbed/strigg/analyses/20250701_diffabund/salmon.merged.gene_counts_length_scaled_dataset1.tsv --feature_type gene --features_gtf_feature_type gene --gtf /gscratch/srlab/strigg/GENOMES/GCF_002022765.2_C_virginica-3.0_genomic_noEmptyGeneIDs.gtf

CPU-Hours

0.2 (1.5% cached)

Launch directory

/mmfs1/gscratch/scrubbed/strigg/analyses/20250701_diffabund

Work directory

/mmfs1/gscratch/scrubbed/strigg/analyses/20250701_diffabund/work

Project directory

/mmfs1/home/strigg/.nextflow/assets/nf-core/differentialabundance

Script name

main.nf

Script ID

245bb78a7f289adc8d5fe330165781c1

Workflow session

b3f06869-0d12-4ae2-8a82-f397ea4aea3b

Workflow repository

https://github.com/nf-core/differentialabundance, revision master (commit hash 3dd360fed0dca1780db1bdf5dce85e5258fa2253)

Workflow profile

standard

Workflow container

[RMARKDOWNNOTEBOOK:biocontainers/r-shinyngs:1.8.8--r43hdfd78af_0]

Container engine

singularity

Nextflow version

version 24.10.6, build 5937 (23-04-2025 16:53 UTC)