Nextflow workflow report

[suspicious_ride]

Run times

15-Apr-2025 10:16:57 - 15-Apr-2025 11:15:08 (duration: 58m 11s)

  1415 succeeded  

  0 cached  

  0 ignored  

  0 failed  

Nextflow command

nextflow run nf-core/rnaseq -resume -c /gscratch/srlab/nextflow/uw_hyak_srlab.config --input /gscratch/scrubbed/strigg/analyses/20250415_RNAseq/samplesheet_rnaseq_dataset2.csv --outdir /gscratch/scrubbed/strigg/analyses/20250415_RNAseq --gtf /gscratch/srlab/elstrand/genomes/C_virginica/mod_GCF_002022765.2_C_virginica-3.0_genomic.gtf --gff /gscratch/srlab/elstrand/genomes/C_virginica/GCF_002022765.2_C_virginica-3.0_genomic.gff.gz --fasta /gscratch/srlab/elstrand/genomes/C_virginica/GCF_002022765.2_C_virginica-3.0_genomic.fna.gz --trimmer fastp --extra_fastp_args '--cut_mean_quality 30 --trim_front1 10 --trim_front2 10 --adapter_fasta /mmfs1/gscratch/scrubbed/strigg/analyses/20250415_RNAseq/polyA.fa' --aligner star_salmon --skip_pseudo_alignment --multiqc_title Cvir_disease_rnaseq_dataset2 --deseq2_vst

CPU-Hours

36.8

Launch directory

/mmfs1/gscratch/scrubbed/strigg/analyses/20250415_RNAseq

Work directory

/mmfs1/gscratch/scrubbed/strigg/analyses/20250415_RNAseq/work

Project directory

/mmfs1/home/strigg/.nextflow/assets/nf-core/rnaseq

Script name

main.nf

Script ID

85c9b75b8bdc95677d64453c279377bf

Workflow session

b2281f7f-b34d-4481-907e-fecd76cf3df3

Workflow repository

https://github.com/nf-core/rnaseq, revision master (commit hash b96a75361a4f1d49aa969a2b1c68e3e607de06e8)

Workflow profile

standard

Nextflow version

version 24.10.5, build 5935 (04-03-2025 17:55 UTC)