File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr3644_23_1_val_1_bismark_bt2_pe.bam	39886674	7475140	29817346	2594188	0	806622	6668518	157452642	2361531	17809783	123910	27618680	513979	109024759
zr3644_8_1_val_1_bismark_bt2_pe.bam	42319762	7687471	31932476	2699815	0	777751	6909720	163715359	2529649	18427505	130308	28656722	543534	113427641
zr3644_14_1_val_1_bismark_bt2_pe.bam	36330155	6569103	27539773	2221279	0	640121	5928982	141272203	2421637	15598552	113456	24652083	464998	98021477
zr3644_3_1_val_1_bismark_bt2_pe.bam	38898949	7028663	29421570	2448716	0	673993	6354670	152562159	2291535	17121870	114790	26557094	479931	105996939
zr3644_5_1_val_1_bismark_bt2_pe.bam	44070468	7816074	33611358	2643036	0	768688	7047386	169444898	2546429	18911543	130449	29473173	538623	117844681
zr3644_22_1_val_1_bismark_bt2_pe.bam	47002167	8769375	35271454	2961338	0	953543	7815832	188135383	2858100	21237399	148881	33073118	614380	130203505
zr3644_19_1_val_1_bismark_bt2_pe.bam	48622480	8953215	36605215	3064048	2	885394	8067821	193025525	2887126	21731103	149543	33751427	626887	133879439
zr3644_9_1_val_1_bismark_bt2_pe.bam	47549173	8923606	35356408	3269159	0	1047010	7876596	177619976	2841672	20094534	135084	31323818	562492	122662376
zr3644_13_1_val_1_bismark_bt2_pe.bam	53283080	9741705	40271901	3269474	0	1095232	8646473	209811466	3175971	23423624	163174	36527319	677574	145843804
zr3644_18_1_val_1_bismark_bt2_pe.bam	50924846	9572084	38099078	3253683	1	997548	8574536	204184496	3152716	22966135	160904	35954446	663592	141286703
zr3644_12_1_val_1_bismark_bt2_pe.bam	46834236	8603628	35436878	2793730	0	913360	7690268	180616003	2492099	20099845	133026	30650511	559805	126680717
zr3644_24_1_val_1_bismark_bt2_pe.bam	52224153	9757385	39151427	3315339	2	1087410	8669975	208382167	3140582	23487060	164134	36592459	677399	144320533
zr3644_4_1_val_1_bismark_bt2_pe.bam	49291431	8925651	37358551	3007228	1	968713	7956938	189689083	2756763	21291550	139263	32776876	576407	132148224
zr3644_21_1_val_1_bismark_bt2_pe.bam	50439709	9139246	38230667	3069795	1	982016	8157230	196972672	2976665	22165355	153273	34356691	631919	136688769
zr3644_16_1_val_1_bismark_bt2_pe.bam	50366533	9346726	37728226	3291580	1	1061404	8285322	188422822	2910421	21217017	145633	33056387	602696	130490668
zr3644_6_1_val_1_bismark_bt2_pe.bam	53154356	9839744	40000450	3314161	1	1116344	8723400	208813627	3111903	23388796	162313	36351272	679322	145120021
zr3644_1_1_val_1_bismark_bt2_pe.bam	50971874	9422910	38207776	3341188	0	1089904	8333006	194118785	2750926	21997717	146207	34094177	604276	134525482
zr3644_10_1_val_1_bismark_bt2_pe.bam	51881323	9547856	39026538	3306929	0	1065152	8482704	201518894	3188437	22658550	156132	35371331	648687	139495757
zr3644_17_1_val_1_bismark_bt2_pe.bam	57405988	10665279	42811092	3929616	1	1227998	9437281	225137617	3439564	25479895	176349	39636594	736092	155669123
zr3644_20_1_val_1_bismark_bt2_pe.bam	53375983	8495615	42026876	2853490	2	875223	7620392	185702002	2797481	20888925	144160	32317063	603015	128951358
zr3644_11_1_val_1_bismark_bt2_pe.bam	56042989	10248649	42241767	3552573	0	1124930	9123719	216073814	3312675	24335547	168003	37812618	699369	149745602
zr3644_2_1_val_1_bismark_bt2_pe.bam	55008026	9914011	41662745	3431270	0	1159915	8754096	215818909	3183044	24133180	163338	37321339	688134	150329874
zr3644_15_1_val_1_bismark_bt2_pe.bam	58414181	10770540	44050172	3593469	0	1200847	9569693	229436881	3740014	25509747	180567	39938783	749553	159318217
zr3644_7_1_val_1_bismark_bt2_pe.bam	81536506	14746155	61851683	4938668	0	1549518	13196637	317663565	4837769	35368997	244988	55033651	1023761	221154399