[2025-04-16 06:54:09,702] multiqc.config                                     [INFO   ]  Loading config settings from: multiqc_config.yml
[2025-04-16 06:54:10,159] multiqc.core.version_check                         [WARNING]  MultiQC Version v1.28 now available!
[2025-04-16 06:54:10,160] multiqc.core.file_search                           [INFO   ]  Search path: /gscratch/scrubbed/srlab/nxf.4yX7fvD16m
[2025-04-16 06:54:56,690] multiqc.modules.bismark.bismark                    [INFO   ]  Found 24 alignment reports
[2025-04-16 06:54:57,281] multiqc.modules.bismark.bismark                    [INFO   ]  Found 24 dedup reports
[2025-04-16 06:54:57,292] multiqc.modules.bismark.bismark                    [INFO   ]  Found 24 methextract reports
[2025-04-16 06:54:57,350] multiqc.modules.custom_content.custom_content      [WARNING]  HTML plot type found with more than one dataset in nf-core-methylseq-methods-description
[2025-04-16 06:54:57,350] multiqc.modules.custom_content.custom_content      [INFO   ]  nf-core-methylseq-methods-description: Found 1 sample (html)
[2025-04-16 06:54:57,350] multiqc.modules.custom_content.custom_content      [WARNING]  HTML plot type found with more than one dataset in nf-core-methylseq-summary
[2025-04-16 06:54:57,350] multiqc.modules.custom_content.custom_content      [INFO   ]  nf-core-methylseq-summary: Found 1 sample (html)
[2025-04-16 06:54:57,485] multiqc.modules.qualimap.qualimap                  [INFO   ]  Found 24 BamQC reports
[2025-04-16 06:54:59,342] multiqc.modules.fastqc.fastqc                      [INFO   ]  Found 48 reports
[2025-04-16 06:54:59,581] multiqc.core.write_results                         [INFO   ]  Rendering plots. Export plots to formats png, svg, pdf is requested, so it might take a while. To disable plot export, set `export_plots: false` in config, or remove the `--export-plots` command line flag