File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr3644_3.zr3644_3_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	38913609	22768004	10059772	6085825	8	2070505	20697499	504041235	6504704	57031119	533285	85499819	2813850	351658458
zr3644_23.zr3644_23_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	39902509	25336704	7862442	6703350	13	2811763	22524941	539462955	6964911	61169675	463790	92456213	2054930	376353436
zr3644_5.zr3644_5_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	44083656	24473777	13336096	6273780	3	2298323	22175454	541134575	7080947	60387019	696644	91487850	4044989	377437126
zr3644_4.zr3644_4_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	49306248	27219622	14852741	7233868	17	2577307	24642315	597060807	7480202	67748396	742727	100194028	4234887	416660567
zr3644_12.zr3644_12_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	46849571	25507925	14723308	6618334	4	2285793	23222132	554872499	6625115	62567336	729691	91261990	4352114	389336253
zr3644_14.zr3644_14_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	36340861	23105309	7331089	5904462	1	2367093	20738216	501921185	7357521	55682833	444645	85518402	1936736	350981048
zr3644_17.zr3644_17_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	57429743	36128340	11154732	10146667	4	4269489	31858851	771444310	10164978	87484846	663605	132766024	2937649	537427208
zr3644_20.zr3644_20_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	53390071	33612870	11287575	8489603	23	3909352	29703518	732651614	9445187	82622700	639809	124908917	2792722	512242279
zr3644_2.zr3644_2_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	55025914	34518514	11517458	8989918	24	4161627	30356887	759569256	9611972	85231753	629135	128609075	2793741	532693580
zr3644_8.zr3644_8_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	42336845	26624690	8607140	7105001	14	2781076	23843614	574656882	7618074	64942067	502780	98368762	2235359	400989840
zr3644_22.zr3644_22_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	47019646	29926180	9373380	7720075	11	3348578	26577602	649003367	8485518	73453499	558960	111578861	2462290	452464239
zr3644_18.zr3644_18_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50943423	32453785	10076246	8413375	17	3470227	28983558	700132074	9309551	78870548	604011	120543388	2651521	488153055
zr3644_1.zr3644_1_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50993451	32369335	9935513	8688597	6	3884250	28485085	674324245	8166055	76461893	551309	115680530	2444649	471019809
zr3644_10.zr3644_10_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	51902712	32600691	10718126	8583883	12	3738733	28861958	696011836	9460197	78541815	592082	119406662	2652321	485358759
zr3644_16.zr3644_16_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50386602	32039248	9725717	8621632	5	3784990	28254258	653951577	8684118	73791134	552821	111989556	2457919	456476029
zr3644_21.zr3644_21_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50457301	31890251	10480449	8086586	15	3558833	28331418	696252552	9025128	78549881	592615	118707274	2590793	486786861
zr3644_19.zr3644_19_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	48641567	30819716	9827336	7994485	30	3140503	27679213	672818926	8606225	75921549	569671	114976355	2546315	470198811
zr3644_9.zr3644_9_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	47573665	29912860	9250079	8410717	9	3597247	26315613	602533663	8262697	68348214	507169	103688211	2276612	419450760
zr3644_24.zr3644_24_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	52244045	33295859	10346624	8601555	7	3813913	29481946	718461562	9316997	81169270	616095	123272526	2719545	501367129
zr3644_6.zr3644_6_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	53174813	33775186	10766456	8633159	12	3935321	29839865	724356429	9302695	81335357	612641	123282161	2724603	507098972
zr3644_13.zr3644_13_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	53303436	33654391	11108037	8541005	3	3906156	29748235	732586795	9508676	82090168	624537	124702873	2764133	512896408
zr3644_11.zr3644_11_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	56063348	35206402	11582645	9274296	5	3972370	31234032	750846291	9889854	84842819	640788	128461322	2872041	524139467
zr3644_15.zr3644_15_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	58435477	37014978	12042787	9377699	13	4233097	32781881	797036851	11086044	89072643	689615	135594713	3056377	557537459
zr3644_7.zr3644_7_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	81572749	51364992	17205989	13001739	29	5582518	45782474	1120138697	14574390	125296061	943517	189731963	4197785	785394981