Nextflow workflow report

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 1.

The full error message was:

Error executing process > 'NFCORE_DENOVOTRANSCRIPT:DENOVOTRANSCRIPT:RNAQUAST (all_assembled)'

Caused by:
  Process `NFCORE_DENOVOTRANSCRIPT:DENOVOTRANSCRIPT:RNAQUAST (all_assembled)` terminated with an error exit status (1)


Command executed:

  rnaQUAST.py \
      --output_dir . \
      --transcripts all_assembled.okay.mrna \
      --threads 6 \
      --labels all_assembled \
       \
       \
  
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_DENOVOTRANSCRIPT:DENOVOTRANSCRIPT:RNAQUAST":
      rnaquast: $(rnaQUAST.py -h | grep "QUALITY ASSESSMENT" | head -n1 | awk -F " v." '{print $2}')
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Command error:
  INFO:    Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred
  INFO:    Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred
  INFO:    Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred
  write cache: Disk quota exceeded
  OSError: [Errno 122] Disk quota exceeded
  
  During handling of the above exception, another exception occurred:
  
  Traceback (most recent call last):
    File "/usr/local/bin/rnaQUAST.py", line 23, in 
      from general import UtilsAlignment
    File "/usr/local/share/rnaquast-2.3.0-0/general/UtilsAlignment.py", line 10, in 
      from objects import Alignment
    File "/usr/local/share/rnaquast-2.3.0-0/objects/Alignment.py", line 8, in 
      from pylab import *
    File "/usr/local/lib/python3.9/site-packages/pylab.py", line 1, in 
      from matplotlib.pylab import *
    File "/usr/local/lib/python3.9/site-packages/matplotlib/pylab.py", line 44, in 
      from matplotlib import cbook, mlab, pyplot as plt
    File "/usr/local/lib/python3.9/site-packages/matplotlib/pyplot.py", line 56, in 
      import matplotlib.colorbar
    File "/usr/local/lib/python3.9/site-packages/matplotlib/colorbar.py", line 19, in 
      from matplotlib import _api, cbook, collections, cm, colors, contour, ticker
    File "/usr/local/lib/python3.9/site-packages/matplotlib/contour.py", line 15, in 
      from matplotlib.backend_bases import MouseButton
    File "/usr/local/lib/python3.9/site-packages/matplotlib/backend_bases.py", line 46, in 
      from matplotlib import (
    File "/usr/local/lib/python3.9/site-packages/matplotlib/text.py", line 16, in 
      from .font_manager import FontProperties
    File "/usr/local/lib/python3.9/site-packages/matplotlib/font_manager.py", line 1582, in 
      fontManager = _load_fontmanager()
    File "/usr/local/lib/python3.9/site-packages/matplotlib/font_manager.py", line 1577, in _load_fontmanager
      json_dump(fm, fm_path)
    File "/usr/local/lib/python3.9/site-packages/matplotlib/font_manager.py", line 967, in json_dump
      _log.warning('Could not save font_manager cache %s', e)
  OSError: [Errno 122] Disk quota exceeded

Work dir:
  /mmfs1/gscratch/scrubbed/strigg/analyses/20241109_denovo/work/87/86d07abb89aba76028156cf7d08216

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`