nf-core/rnaseq v1.4.2
Run Name: nasty_legentil
nf-core/rnaseq execution completed successfully!
The workflow was completed at 2020-10-27T10:42:44.044-07:00 (duration: 4m 27s)
The command used to launch the workflow was as follows:
nextflow run nf-core/rnaseq -profile test,docker
Pipeline Configuration:
| Pipeline Release | master |
|---|---|
| Run Name | nasty_legentil |
| Reads | data/*{1,2}.fastq.gz |
| Data Type | Single-End |
| Strandedness | None |
| Trimming | 5'R1: 0 / 5'R2: 0 / 3'R1: 0 / 3'R2: 0 / NextSeq Trim: 0 |
| Aligner | STAR |
| Fasta Ref | https://github.com/nf-core/test-datasets/raw/rnaseq/reference/genome.fa |
| GTF Annotation | https://github.com/nf-core/test-datasets/raw/rnaseq/reference/genes.gtf |
| GFF3 Annotation | https://github.com/nf-core/test-datasets/raw/rnaseq/reference/genes.gff |
| Remove Ribosomal RNA | false |
| Biotype GTF field | gene_biotype |
| Save prefs | Ref Genome: No / Trimmed FastQ: No / Alignment intermediates: No |
| Max Resources | 6 GB memory, 2 cpus, 2d time per job |
| Container | docker - nfcore/rnaseq:1.4.2 |
| Output dir | ./results |
| Launch dir | /home/srlab/Documents/Shelly |
| Working dir | /home/srlab/Documents/Shelly/work |
| Script dir | /home/srlab/.nextflow/assets/nf-core/rnaseq |
| User | srlab |
| Config Profile | test,docker |
| Config Description | Minimal test dataset to check pipeline function |
| Date Started | 2020-10-27T10:38:16.862-07:00 |
| Date Completed | 2020-10-27T10:42:44.044-07:00 |
| Pipeline script file path | /home/srlab/.nextflow/assets/nf-core/rnaseq/main.nf |
| Pipeline script hash ID | efd50c97fd77bdc6b6161e3ee76f7ddd |
| Pipeline repository Git URL | https://github.com/nf-core/rnaseq.git |
| Pipeline repository Git Commit | 3b6df9bd104927298fcdf69e97cca7ff1f80527c |
| Pipeline Git branch/tag | master |
| Docker image | nfcore/rnaseq:1.4.2 |
| Nextflow Version | 20.07.1 |
| Nextflow Build | 5412 |
| Nextflow Compile Timestamp | 24-07-2020 15:18 UTC |
nf-core/rnaseq