FastQCFastQC Report
Tue 27 Oct 2020
SRR4238359_subsamp.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4238359_subsamp.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2083
Sequences flagged as poor quality0
Sequence length26-51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGAGACTTGCAAAGTGTTGGAGTGACCAGCACCGGCCTTGAAACCTTGG130.6240998559769564No Hit
CTGGGTTGTTGGTCTTTGGACCGATGGTACCAATGATGGAGGTTCTTCTC120.5760921747479597No Hit
GTCCTTACCTTGTTCACCCAAGACTTCTCTGATGGTCAAAACATCGTTGGC120.5760921747479597No Hit
CTGGGATTTCAATACCCAAGTCACCTCTGGCAACCATAACACCGTCAGTG100.4800768122899664No Hit
CCTTACCTTGTTCACCCAAGACTTCTCTGATGGTCAAAACATCGTTGGCGG100.4800768122899664No Hit
GGCGGTTTCACCAGACAACATAACACAGTCAGCACCATCCAAGATAGCGTT90.4320691310609697No Hit
GGCGGTTCTGATGAAAGAAGCGAAGACCATGTGGACACCGTTCTTGACACC90.4320691310609697No Hit
GTGAAGATCATTTCGTGGTTTGGTGGGATTGGGTAGTCAACATCGTTGGTG90.4320691310609697No Hit
GCCAAGACTTCTGGGGCTGGGATTTCAATACCCAAGTCACCTCTGGCAACC80.3840614498319731No Hit
GTGGGATTGGGTAGTCAACATCGTTGGTGGTGGTACCAGTTCTGATTTCTG80.3840614498319731No Hit
CGGGCTTCAACATCATCAGTCCAGTCAGAGACAGGTTCCTTTTCGAAAACG80.3840614498319731No Hit
CTTACCTTGTTCACCCAAGACTTCTCTGATGGTCAAAACATCGTTGGCGGT80.3840614498319731No Hit
CTTGGGTTGTAAGTCATGGATTCCAACATTTGGGTAGCACAGATAACTGGC70.3360537686029765No Hit
GTCCAGTCAGAGACAGGTTCCTTTTCGAAAACGAATGGGAAGACACCTCTG70.3360537686029765No Hit
CTTTTTTTAAACGGTAGAGACTTGCAAAGTGTTGGAGTGACCAGCACCGGC70.3360537686029765No Hit
CCTGGGTACAATTCTTCGGACTTTCTGGCGTTGTCAATGACAGACTTGTGG70.3360537686029765No Hit
GGACAGCCAAGACTTCTGGGGCTGGGATTTCAATACCCAAGTCACCTCTGG70.3360537686029765No Hit
GGCCAATGGTCTACCTGGGTACAATTCTTCGGACTTTCTGGCGTTGTCAAT70.3360537686029765No Hit
GGCAAATCGACATCGGTACCTGGTAAGTTGACACCCTTGTGGGAAC70.3360537686029765No Hit
GGACAATGTTCAAACCAGCCTTTCTCAAAGCAACCAAGGTTTCTGGGTTGT70.3360537686029765No Hit
GGACTTTCTGGCGTTGTCAATGACAGACTTGTGGTATTCGTAAGAACCGTG70.3360537686029765No Hit
CTTCATTCAATCATGATTCTTTTTTTAAACGGTAGAGACTTGCAAAGTGTT60.28804608737397985No Hit
CTCTGGTTGGTCTTGGGTTGTAAGTCATGGATTCCAACATTTGGGTAGCAC60.28804608737397985No Hit
CTTTCTCAAAGCAACCAAGGTTTCTGGGTTGTTGGTCTTTGGACCGATGGT60.28804608737397985No Hit
GCCTTTCTCAAAGCAACCAAGGTTTCTGGGTTGTTGGTCTTTGGACCGATG60.28804608737397985No Hit
GTTGGAGTGACCAGCACCGGCCTTGAAACCTTGGATGGAAACGTAAGTGTC60.28804608737397985No Hit
CCAAGACTTCTCTGATGGTCAAAACATCGTTGGCGGTTCTGATGAAAGA50.2400384061449832No Hit
GCGTACTTGTCATCGGTGGTGAAGATCATTTCGTGGTTTGGTGGGATTGGG50.2400384061449832No Hit
CTAGCAGCTCTTGGGCATCTGGTAACCAAGATGATTGGACAGTTTGGTCTG50.2400384061449832No Hit
ATCGGTACCTGGTAAGTTGACACCCTTGTGGGAACAGATCTTACCGGCGTT50.2400384061449832No Hit
GTCGGAACCGAATAAATCGACATCGTCATCTTCTTCTTCTTCGGCAGCGGC50.2400384061449832No Hit
GTCGTCACAAGCCTTAGCGTACTTGTCATCGGTGGTGAAGATCATTTCGTG50.2400384061449832No Hit
GTTGGTTATCAGCATAAGTGGAAAAGATCTCGGACTTCTTTGTTGGAATGG50.2400384061449832No Hit
CTTTTCAATACCGAAGTTGATACGGGCTTCAACATCATCAGTCCAGTC50.2400384061449832No Hit
CGGCGTTCAAAGCCTTGACCTTCAAAGTCTTGTCGTCAACGACTTCCAAA50.2400384061449832No Hit
GCGGAGATGACCTTGGTGATGTTCTTGTAGTCAACGTACATGATCTTGTCG50.2400384061449832No Hit
CTGGCGTTGTCAATGACAGACTTGTGGTATTCGTAAGAACCGTGAGAGA50.2400384061449832No Hit
CGTGGTTTGGTGGGATTGGGTAGTCAACATCGTTGGTGGTGGTACCAGTTC50.2400384061449832No Hit
CTTGTAGTCAACGTACATGATCTTGTCGTCACAAGCCTTAGCGTACTTGTC50.2400384061449832No Hit
CCGTTCTTGACACCGAATCTCAAATCTTCCTTGTCCTTTTCAGACAAAGCT50.2400384061449832No Hit
GCTGGGATTTCAATACCCAAGTCACCTCTGGCAACCATAACACCGTCAGTG50.2400384061449832No Hit
AGCGGTTTCAGCCATAGTGGTAACGGCGTTGATTGGGTAGTTACCCTTGGC40.19203072491598655No Hit
GGTAGAGACTTGCAAAGTGTTGGAGTGACCAGCACCGGCCTTGAAACCTTG40.19203072491598655No Hit
GGCGTTGATTGGGTAGTTACCCTTGGCGGTTTCACCAGACAACATAACAC40.19203072491598655No Hit
GTCTGTACTTGGAAACCAATCTTGGGGTGGTACCGGAAGTGGACAAGACA40.19203072491598655No Hit
CTTTGGAGTACAGTTTCTCATGTCATCGTAGTTTGGCAAGTAAGCGATAGC40.19203072491598655No Hit
GGACAGTTTGGTCTGTACTTGGAAACCAATCTTGGGGTGGTACCGGAAGTG40.19203072491598655No Hit
GTTGGTTTTCAATCTTGACAATGATCTTGACGTCCTTACCTTGTTCACCC40.19203072491598655No Hit
GCGGTTCTGATGAAAGAAGCGAAGACCATGTGGACACCGTTCTTGACACCG40.19203072491598655No Hit
CTTTTCGAAAACGAATGGGAAGACACCTCTGTACAAGTGAGAGAATCTAGC40.19203072491598655No Hit
GCCTTTTGTTCGAAAACAGCAGCGACAGCGGAGGCAGCGACGGTTTCGGTG40.19203072491598655No Hit
CTTCGGACTTTCTGGCGTTGTCAATGACAGACTTGTGGTATTCGTAAGAAC40.19203072491598655No Hit
CCAGCCTTTCTCAAAGCAACCAAGGTTTCTGGGTTGTTGGTCTTTGGACCG40.19203072491598655No Hit
CACCAGTCAAAATAGCAGCTTGAACAGCAGCACCGTAAGCAACAGCTTCAT40.19203072491598655No Hit
CTGGCAACCATAACACCGTCAGTGACCTTCAAGATTTCGTCGAAGTTGTT40.19203072491598655No Hit
CGTCACAAGCCTTAGCGTACTTGTCATCGGTGGTGAAGATCATTTCGTGGT40.19203072491598655No Hit
GCAGCTCTTGGGCATCTGGTAACCAAGATGATTGGACAGTTTGGTCTGTAC40.19203072491598655No Hit
GTCAAAACATCGTTGGCGGTTCTGATGAAAGAAGCGAAGACCATGTGGAC40.19203072491598655No Hit
ATCGTAGTTTGGCAAGTAAGCGATAGCTTGTTCAGCAATGACAGCGGTTTC40.19203072491598655No Hit
CTTGGAATCAACTTGGTCATGACACCACCAGCAGTTTCAATACCCAAGGAT40.19203072491598655No Hit
GTTTGGTGGGATTGGGTAGTCAACATCGTTGGTGGTGGTACCAGTTCTGAT40.19203072491598655No Hit
GTCACAAGCCTTAGCGTACTTGTCATCGGTGGTGAAGATCATTTCGTGGTT40.19203072491598655No Hit
GACGTCCTTACCTTGTTCACCCAAGACTTCTCTGATGGTCAAAACATCGTT40.19203072491598655No Hit
CGGAAGTTTGAGCGGAGGAAGACAAAGTTCTCTTGGCTCTTTCACAAGC40.19203072491598655No Hit
GGCTGGGATTTCAATACCCAAGTCACCTCTGGCAACCATAACACCGTCAGT30.14402304368698993No Hit
CCGGAAGTGGACAAGACAATGATAGCCTTGGCCTTTTGTTCGAAAACAGC30.14402304368698993No Hit
GTGGCTTACCGTCAACATCGATCAACTTGAATGGGAAGTGCTTCATGTC30.14402304368698993No Hit
GGACTTAGCAGCTGGCTTAGCTGGCTTAGCAGCCTTCTTAGCGTTGTATGC30.14402304368698993No Hit
GTTGAAGTAGTCAGTGACCAATTTTTGGACCTTTGGAATTCTGGTAGAACC30.14402304368698993No Hit
CTTCAACATCATCAGTCCAGTCAGAGACAGGTTCCTTTTCGAAAACGAATG30.14402304368698993No Hit
CCGGCGTTCAAAGCCTTGACCTTCAAAGTCTTGTCGTCAACGACTTCCAA30.14402304368698993No Hit
CCGGCCTTGAAACCTTGGATGGAAACGTAAGTGTCACCCTTCTTCAAGAT30.14402304368698993No Hit
CATGATTCTTTTTTTAAACGGTAGAGACTTGCAAAGTGTTGGAGTGACC30.14402304368698993No Hit
CACCCTTCTTCAAGATACCGAATTCCTTAGCCTTTTCAATACCGAAGTTG30.14402304368698993No Hit
CTTGCAAAGTGTTGGAGTGACCAGCACCGGCCTTGAAACCTTGGATGGAA30.14402304368698993No Hit
CGGACTTTCTGGCGTTGTCAATGACAGACTTGTGGTATTCGTAAGAACCGT30.14402304368698993No Hit
CTGTACTTGGAAACCAATCTTGGGGTGGTACCGGAAGTGGACAAGACAATG30.14402304368698993No Hit
GTTGTCAATGACAGACTTGTGGTATTCGTAAGAACCGTGAGAGAAGTTCAT30.14402304368698993No Hit
CTTCTTGTTCTTTCTCTTGAATTCTTGGATGAAGTGGTTGACCAATCTGTT30.14402304368698993No Hit
GTTCAAACCAGCCTTTCTCAAAGCAACCAAGGTTTCTGGGTTGTTGGTCTT30.14402304368698993No Hit
GTTCAAAGCCTTGACCTTCAAAGTCTTGTCGTCAACGACTTCCAAAACTTG30.14402304368698993No Hit
GTCAACGTACATGATCTTGTCGTCACAAGCCTTAGCGTACTTGTCATCGGT30.14402304368698993No Hit
CCTTTCTCAAAGCAACCAAGGTTTCTGGGTTGTTGGTCTTTGGACCGATGG30.14402304368698993No Hit
CTTGAATTTTTCGGCTTCAGCAACCATCTTTTCGATATCTTCCTTGGACA30.14402304368698993No Hit
CCCTTCTTCAAGATACCGAATTCCTTAGCCTTTTCAATACCGAAGTTGAT30.14402304368698993No Hit
ATGTCTTTATATAAAATTTAAAAAATATAATTCAAAAAAATAATATCTTC30.14402304368698993No Hit
CCTTGACCTTCAAAGTCTTGTCGTCAACGACTTCCAAAACTTGGAAAGAC30.14402304368698993No Hit
GAGAGAATCTAGCAGCTCTTGGGCATCTGGTAACCAAGATGATTGGACAGT30.14402304368698993No Hit
CTGATTTCTGGACCCTTGGTGTCCAAAGCAATGGCCAATGGTCTACCTGGG30.14402304368698993No Hit
GGGTGGTACCGGAAGTGGACAAGACAATGATAGCCTTGGCCTTTTGTTCG30.14402304368698993No Hit
CTTGAATTCTTGGATGAAGTGGTTGACCAATCTGTTGTCAAAATCTTCACC30.14402304368698993No Hit
CCTTAGTCTTGGCTCTTTCACCTTCAAAGACTTGAATCAAGACACCTGGTT30.14402304368698993No Hit
CGTAGTTTGGCAAGTAAGCGATAGCTTGTTCAGCAATGACAGCGGTTTC30.14402304368698993No Hit
GGCATCTGGTAACCAAGATGATTGGACAGTTTGGTCTGTACTTGGAAACC30.14402304368698993No Hit
GAGACTTGCAAAGTGTTGGAGTGACCAGCACCGGCCTTGAAACCTTGGATG30.14402304368698993No Hit
CAGCCATAGTGGTAACGGCGTTGATTGGGTAGTTACCCTTGGCGGTTTCAC30.14402304368698993No Hit
GTCTTTATATAAAATTTAAAAAATATAATTCAAAAAAATAATATCTTCATT30.14402304368698993No Hit
GGTTGGTAGACAAGTCCTTCTTGTTCTTTCTCTTGAATTCTTGGATGAAGT30.14402304368698993No Hit
CCAAGACTTCTGGGGCTGGGATTTCAATACCCAAGTCACCTCTGGCAACC30.14402304368698993No Hit
GTCAGCTTCTTCATCGTCGGAACCGAATAAATCGACATCGTCATCTTCTTC30.14402304368698993No Hit
CGGCAGTTTCCTTCATCTTACCCAAGACCATGGAGGAGATTTGTTCTGGGG30.14402304368698993No Hit
GTTGGCGGTTCTGATGAAAGAAGCGAAGACCATGTGGACACCGTTCTTGAC30.14402304368698993No Hit
CGGACAATGTTCAAACCAGCCTTTCTCAAAGCAACCAAGGTTTCTGGGTTG30.14402304368698993No Hit
CTTTATATAAAATTTAAAAAATATAATTCAAAAAAATAATATCTTCATTC30.14402304368698993No Hit
GTCGAATTCATCGGCCTTGGAAGCGATGTGGTTGAACCATCTGGAGAATTC30.14402304368698993No Hit
TGGGATTTCAATACCCAAGTCACCTCTGGCAACCATAACACCGTCAGTGAC30.14402304368698993No Hit
GTCACCCTTCTTCAAGATACCGAATTCCTTAGCCTTTTCAATACCGAAGTT30.14402304368698993No Hit
GTGACCAGCACCGGCCTTGAAACCTTGGATGGAAACGTAAGTGTCACCCTT30.14402304368698993No Hit
GCTTCAACATCATCAGTCCAGTCAGAGACAGGTTCCTTTTCGAAAACGAAT30.14402304368698993No Hit
CACCCTTGTGGGAACAGATCTTACCGGCGTTCAAAGCCTTGACCTTCAA30.14402304368698993No Hit
GTCCAAAGTAGATCTGAACAAGTCAGCACACAATTCTTCGAATCTGGCTCT30.14402304368698993No Hit
GGTATTCGTAAGAACCGTGAGAGAAGTTCATACGGACAATGTTCAAACC30.14402304368698993No Hit
CCCTTTTCGACGGCGGAAACATTCAAAATACCGTTAGAGTCGACATCGAA30.14402304368698993No Hit
CAATGTTCAAACCAGCCTTTCTCAAAGCAACCAAGGTTTCTGGGTTGTTGG30.14402304368698993No Hit
CTCTTGGGCATCTGGTAACCAAGATGATTGGACAGTTTGGTCTGTACTTGG30.14402304368698993No Hit
CTTGGATGGAAACGTAAGTGTCACCCTTCTTCAAGATACCGAATTCCTT30.14402304368698993No Hit
CTCATGTCATCGTAGTTTGGCAAGTAAGCGATAGCTTGTTCAGCAATGAC30.14402304368698993No Hit
GTTCTGTTACCTTGATCGTTGGCAATAATGTCCACACGATCATTAGCAA30.14402304368698993No Hit
CAATGGTCTACCTGGGTACAATTCTTCGGACTTTCTGGCGTTGTCAATGAC30.14402304368698993No Hit
GTCAACATCGTTGGTGGTGGTACCAGTTCTGATTTCTGGACCCTTGGTGTC30.14402304368698993No Hit
GGCAAGTAAGCGATAGCTTGTTCAGCAATGACAGCGGTTTCAGCCATAGTG30.14402304368698993No Hit
TCCAACATTTGGGTAGCACAGATAACTGGCTTACCAGCCAAGTTAGACTT30.14402304368698993No Hit
TTCTTGTCCAAACCGTAAGCAATGGCAGCGGCGGTAGGTTCGTTAATAAT30.14402304368698993No Hit
CCAAAGTAGATCTGAACAAGTCAGCACACAATTCTTCGAATCTGGCTCTGG30.14402304368698993No Hit

[OK]Adapter Content

Adapter graph